Results 81 - 100 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 38515 | 0.66 | 0.959968 |
Target: 5'- aGACCuGACGcaacuuGUCGAaGAGCugaaCGGCg -3' miRNA: 3'- gCUGGuUUGC------UAGCUaCUUGug--GCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 38710 | 0.7 | 0.834843 |
Target: 5'- -cGCCAucaaGAUGAcCGAUGAGCAgUCGGCu -3' miRNA: 3'- gcUGGU----UUGCUaGCUACUUGU-GGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 39021 | 0.67 | 0.953325 |
Target: 5'- --cCCAAACaGGUCGAUGAGCcauucaagcuguucCCGGUu -3' miRNA: 3'- gcuGGUUUG-CUAGCUACUUGu-------------GGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 39386 | 0.68 | 0.913222 |
Target: 5'- uGGCCGAACGAgauucCGcucUGGcaGCACaCGGCg -3' miRNA: 3'- gCUGGUUUGCUa----GCu--ACU--UGUG-GCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 39434 | 0.66 | 0.963772 |
Target: 5'- -uGCCAa--GGUCGAUGAACAgUGcGCu -3' miRNA: 3'- gcUGGUuugCUAGCUACUUGUgGC-CG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 39856 | 0.78 | 0.42131 |
Target: 5'- gGACCAAACGAaCGAuUGGGCGaaGGCa -3' miRNA: 3'- gCUGGUUUGCUaGCU-ACUUGUggCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 40271 | 0.71 | 0.776695 |
Target: 5'- uCGAUgc-GCGGUCGAUGGuaguACAuCCGGCg -3' miRNA: 3'- -GCUGguuUGCUAGCUACU----UGU-GGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 40370 | 0.67 | 0.942032 |
Target: 5'- -uGCCGAGCGGUCGccGGAUguacuaccaucgACCGcGCa -3' miRNA: 3'- gcUGGUUUGCUAGCuaCUUG------------UGGC-CG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 41326 | 0.67 | 0.942032 |
Target: 5'- uCGACCGGcacgccGCGAUCGuugAUGAGCugauCCaGCu -3' miRNA: 3'- -GCUGGUU------UGCUAGC---UACUUGu---GGcCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 41418 | 0.68 | 0.925018 |
Target: 5'- gGAUCAgcucaucAACGAUCGcgGcgUGCCGGUc -3' miRNA: 3'- gCUGGU-------UUGCUAGCuaCuuGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 44142 | 0.72 | 0.745361 |
Target: 5'- cCGAgCAGAUGAUCGggGcguAUGCCGGUc -3' miRNA: 3'- -GCUgGUUUGCUAGCuaCu--UGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 44646 | 0.69 | 0.869315 |
Target: 5'- gCGGCCGAgaagGCGcUCGAaGAagACGCgGGCg -3' miRNA: 3'- -GCUGGUU----UGCuAGCUaCU--UGUGgCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 44841 | 0.68 | 0.913222 |
Target: 5'- aCGACCAcGGCGGcCGGcaaGGGCGgCGGCa -3' miRNA: 3'- -GCUGGU-UUGCUaGCUa--CUUGUgGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 45979 | 0.66 | 0.963772 |
Target: 5'- aGGCCAAGCu-UCGAggcUGGACGCUGa- -3' miRNA: 3'- gCUGGUUUGcuAGCU---ACUUGUGGCcg -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 46015 | 0.7 | 0.861063 |
Target: 5'- uGGCCu-GCGcAUCGAcgcgGcgcAACACCGGCa -3' miRNA: 3'- gCUGGuuUGC-UAGCUa---C---UUGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 48601 | 0.67 | 0.955898 |
Target: 5'- aCGAUCAAACGaAUCGucuaGugACgCGGCg -3' miRNA: 3'- -GCUGGUUUGC-UAGCuac-UugUG-GCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 49273 | 0.67 | 0.951555 |
Target: 5'- -aGCCGcACGucauccgcAUCGGUGggUACUGGUa -3' miRNA: 3'- gcUGGUuUGC--------UAGCUACuuGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 50237 | 0.68 | 0.92561 |
Target: 5'- uCGGCCGcgUGAU-GAUGAAgGgCGGCc -3' miRNA: 3'- -GCUGGUuuGCUAgCUACUUgUgGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 50354 | 0.69 | 0.885043 |
Target: 5'- uGGCUgAGACGAUCGccGcAAUGCCGGUc -3' miRNA: 3'- gCUGG-UUUGCUAGCuaC-UUGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 50947 | 0.7 | 0.834843 |
Target: 5'- gCGACCGcaaGcgCGGUGcGCACgGGCa -3' miRNA: 3'- -GCUGGUuugCuaGCUACuUGUGgCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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