miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22701 3' -49.6 NC_005091.1 + 44841 0.68 0.913222
Target:  5'- aCGACCAcGGCGGcCGGcaaGGGCGgCGGCa -3'
miRNA:   3'- -GCUGGU-UUGCUaGCUa--CUUGUgGCCG- -5'
22701 3' -49.6 NC_005091.1 + 44646 0.69 0.869315
Target:  5'- gCGGCCGAgaagGCGcUCGAaGAagACGCgGGCg -3'
miRNA:   3'- -GCUGGUU----UGCuAGCUaCU--UGUGgCCG- -5'
22701 3' -49.6 NC_005091.1 + 44142 0.72 0.745361
Target:  5'- cCGAgCAGAUGAUCGggGcguAUGCCGGUc -3'
miRNA:   3'- -GCUgGUUUGCUAGCuaCu--UGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 41418 0.68 0.925018
Target:  5'- gGAUCAgcucaucAACGAUCGcgGcgUGCCGGUc -3'
miRNA:   3'- gCUGGU-------UUGCUAGCuaCuuGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 41326 0.67 0.942032
Target:  5'- uCGACCGGcacgccGCGAUCGuugAUGAGCugauCCaGCu -3'
miRNA:   3'- -GCUGGUU------UGCUAGC---UACUUGu---GGcCG- -5'
22701 3' -49.6 NC_005091.1 + 40370 0.67 0.942032
Target:  5'- -uGCCGAGCGGUCGccGGAUguacuaccaucgACCGcGCa -3'
miRNA:   3'- gcUGGUUUGCUAGCuaCUUG------------UGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 40271 0.71 0.776695
Target:  5'- uCGAUgc-GCGGUCGAUGGuaguACAuCCGGCg -3'
miRNA:   3'- -GCUGguuUGCUAGCUACU----UGU-GGCCG- -5'
22701 3' -49.6 NC_005091.1 + 39856 0.78 0.42131
Target:  5'- gGACCAAACGAaCGAuUGGGCGaaGGCa -3'
miRNA:   3'- gCUGGUUUGCUaGCU-ACUUGUggCCG- -5'
22701 3' -49.6 NC_005091.1 + 39434 0.66 0.963772
Target:  5'- -uGCCAa--GGUCGAUGAACAgUGcGCu -3'
miRNA:   3'- gcUGGUuugCUAGCUACUUGUgGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 39386 0.68 0.913222
Target:  5'- uGGCCGAACGAgauucCGcucUGGcaGCACaCGGCg -3'
miRNA:   3'- gCUGGUUUGCUa----GCu--ACU--UGUG-GCCG- -5'
22701 3' -49.6 NC_005091.1 + 39021 0.67 0.953325
Target:  5'- --cCCAAACaGGUCGAUGAGCcauucaagcuguucCCGGUu -3'
miRNA:   3'- gcuGGUUUG-CUAGCUACUUGu-------------GGCCG- -5'
22701 3' -49.6 NC_005091.1 + 38710 0.7 0.834843
Target:  5'- -cGCCAucaaGAUGAcCGAUGAGCAgUCGGCu -3'
miRNA:   3'- gcUGGU----UUGCUaGCUACUUGU-GGCCG- -5'
22701 3' -49.6 NC_005091.1 + 38515 0.66 0.959968
Target:  5'- aGACCuGACGcaacuuGUCGAaGAGCugaaCGGCg -3'
miRNA:   3'- gCUGGuUUGC------UAGCUaCUUGug--GCCG- -5'
22701 3' -49.6 NC_005091.1 + 37226 0.66 0.969968
Target:  5'- gCGGCCGGAagaugucggcgaGGUCGAUGAccaucGCcCCGaGCg -3'
miRNA:   3'- -GCUGGUUUg-----------CUAGCUACU-----UGuGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 36815 0.66 0.963772
Target:  5'- -uGCCGGACGA-CGuUGAugGCgaCGGCg -3'
miRNA:   3'- gcUGGUUUGCUaGCuACUugUG--GCCG- -5'
22701 3' -49.6 NC_005091.1 + 36764 0.68 0.922014
Target:  5'- gGACCAcGACGuucgguucguucgCGAUGA-CGCUGGCc -3'
miRNA:   3'- gCUGGU-UUGCua-----------GCUACUuGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 35352 0.69 0.899692
Target:  5'- aCGACCAGuCGAacuucUCGGUcagcagGAGCACCGauGCg -3'
miRNA:   3'- -GCUGGUUuGCU-----AGCUA------CUUGUGGC--CG- -5'
22701 3' -49.6 NC_005091.1 + 34770 0.7 0.84115
Target:  5'- cCGGCCGcgcgcgucGGCGAUCcgcuucagcggguuGAUGAggGCAuCCGGCg -3'
miRNA:   3'- -GCUGGU--------UUGCUAG--------------CUACU--UGU-GGCCG- -5'
22701 3' -49.6 NC_005091.1 + 33309 0.7 0.825646
Target:  5'- gCGGgCAGAUGGUCGccGcgcauuACGCCGGCc -3'
miRNA:   3'- -GCUgGUUUGCUAGCuaCu-----UGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 32250 0.66 0.970607
Target:  5'- cCGAuCCGGcCGAUaCGAgcaaGAACGCCacGGCg -3'
miRNA:   3'- -GCU-GGUUuGCUA-GCUa---CUUGUGG--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.