miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22701 3' -49.6 NC_005091.1 + 32010 0.72 0.745361
Target:  5'- aGAagaAAAUGAUCGAucgUGAucuCGCCGGCa -3'
miRNA:   3'- gCUgg-UUUGCUAGCU---ACUu--GUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 31687 0.68 0.931372
Target:  5'- aGACCGGguGCGAUacCGuagccGCGCCGGCc -3'
miRNA:   3'- gCUGGUU--UGCUA--GCuacu-UGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 31678 0.66 0.959968
Target:  5'- -cGCCAAGCagccuUCGcgGGcACGCCGGUg -3'
miRNA:   3'- gcUGGUUUGcu---AGCuaCU-UGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 31572 1.14 0.002448
Target:  5'- uCGACCAAACGAUCGAUGAACACCGGCg -3'
miRNA:   3'- -GCUGGUUUGCUAGCUACUUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 31521 0.71 0.786844
Target:  5'- cCGGCCcGGCGcuGUCGAUG--UACUGGCa -3'
miRNA:   3'- -GCUGGuUUGC--UAGCUACuuGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 31204 0.72 0.745361
Target:  5'- -uGCCGccGAUGAUCGGcUGcuCGCCGGCa -3'
miRNA:   3'- gcUGGU--UUGCUAGCU-ACuuGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 30867 0.69 0.869315
Target:  5'- gCGACUGGACGA-CGGUu--CGCCGGUu -3'
miRNA:   3'- -GCUGGUUUGCUaGCUAcuuGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 29477 0.75 0.57895
Target:  5'- gCGaACCGGGCGAgCGAcguaGGACGCUGGCg -3'
miRNA:   3'- -GC-UGGUUUGCUaGCUa---CUUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 28236 0.69 0.885043
Target:  5'- cCGGCguGACGAU-GAUGGuuuccgguGCaACCGGCg -3'
miRNA:   3'- -GCUGguUUGCUAgCUACU--------UG-UGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 28096 0.66 0.963772
Target:  5'- gCGGCCGuucuucaGGUCGAuguugaaguucgUGAGCgggauuucgGCCGGCg -3'
miRNA:   3'- -GCUGGUuug----CUAGCU------------ACUUG---------UGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 27731 0.66 0.970607
Target:  5'- cCGACCGG--GAUCG-UGGuGCGCCGuGCu -3'
miRNA:   3'- -GCUGGUUugCUAGCuACU-UGUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 27104 0.69 0.899692
Target:  5'- gGACCAGACGG-CGAaGAuuGCCGcGUa -3'
miRNA:   3'- gCUGGUUUGCUaGCUaCUugUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 26634 0.66 0.970607
Target:  5'- uCGAguucaCGGGCGGUCGAUcGAGuCGgCGGCc -3'
miRNA:   3'- -GCUg----GUUUGCUAGCUA-CUU-GUgGCCG- -5'
22701 3' -49.6 NC_005091.1 + 25957 0.66 0.973653
Target:  5'- aCGugCAGGCGcaaGccGAACGCCucGGCa -3'
miRNA:   3'- -GCugGUUUGCuagCuaCUUGUGG--CCG- -5'
22701 3' -49.6 NC_005091.1 + 25942 0.67 0.955898
Target:  5'- gCGGCCAGGCGAguacggauucguUCGAguUGAACuuCCGcauuGCa -3'
miRNA:   3'- -GCUGGUUUGCU------------AGCU--ACUUGu-GGC----CG- -5'
22701 3' -49.6 NC_005091.1 + 25720 0.66 0.963772
Target:  5'- gCGGCCAGcucgGCGAUCGGcUGccCGCC-GCa -3'
miRNA:   3'- -GCUGGUU----UGCUAGCU-ACuuGUGGcCG- -5'
22701 3' -49.6 NC_005091.1 + 25636 0.66 0.970607
Target:  5'- gCGGgCAGcCGAUCGccGAGCugGCCGcGCa -3'
miRNA:   3'- -GCUgGUUuGCUAGCuaCUUG--UGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 25211 0.7 0.843818
Target:  5'- gCGGCCGcugcaccGgGGUCGAUGca-GCCGGCg -3'
miRNA:   3'- -GCUGGUu------UgCUAGCUACuugUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 25157 0.77 0.471267
Target:  5'- uGGCCGc-CGAUCGGuUGAACGCCGcGCu -3'
miRNA:   3'- gCUGGUuuGCUAGCU-ACUUGUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 25093 0.75 0.567846
Target:  5'- gCGGCCAcggaGGCGGUCGccaucGAcGCGCCGGCu -3'
miRNA:   3'- -GCUGGU----UUGCUAGCua---CU-UGUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.