miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22701 3' -49.6 NC_005091.1 + 394 0.76 0.54581
Target:  5'- gCGGCCAAGCGG-CGGggaGAGCGCgCGGUu -3'
miRNA:   3'- -GCUGGUUUGCUaGCUa--CUUGUG-GCCG- -5'
22701 3' -49.6 NC_005091.1 + 2578 0.77 0.492078
Target:  5'- uCGACCAAAUucUCGAUGGcaucGCACUGGUu -3'
miRNA:   3'- -GCUGGUUUGcuAGCUACU----UGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 52678 0.79 0.374683
Target:  5'- aCGACCAGACGggCGcgc-ACGCCGGCc -3'
miRNA:   3'- -GCUGGUUUGCuaGCuacuUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 31572 1.14 0.002448
Target:  5'- uCGACCAAACGAUCGAUGAACACCGGCg -3'
miRNA:   3'- -GCUGGUUUGCUAGCUACUUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 15744 0.71 0.806627
Target:  5'- -cGCCAuuCGuAUCGAUGAACcgcaGCuCGGCa -3'
miRNA:   3'- gcUGGUuuGC-UAGCUACUUG----UG-GCCG- -5'
22701 3' -49.6 NC_005091.1 + 1251 0.71 0.816237
Target:  5'- gGGCCGGAUG-UCGGaaggcuggggcGAAUACCGGCa -3'
miRNA:   3'- gCUGGUUUGCuAGCUa----------CUUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 57108 0.68 0.906599
Target:  5'- gCGGCCGAGCGGcUGuauaucGAACGCCaGCu -3'
miRNA:   3'- -GCUGGUUUGCUaGCua----CUUGUGGcCG- -5'
22701 3' -49.6 NC_005091.1 + 35352 0.69 0.899692
Target:  5'- aCGACCAGuCGAacuucUCGGUcagcagGAGCACCGauGCg -3'
miRNA:   3'- -GCUGGUUuGCU-----AGCUA------CUUGUGGC--CG- -5'
22701 3' -49.6 NC_005091.1 + 27104 0.69 0.899692
Target:  5'- gGACCAGACGG-CGAaGAuuGCCGcGUa -3'
miRNA:   3'- gCUGGUUUGCUaGCUaCUugUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 3486 0.69 0.898276
Target:  5'- uCGACCAGAUGGUCGucucgu-UCGGCu -3'
miRNA:   3'- -GCUGGUUUGCUAGCuacuuguGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 10113 0.69 0.892505
Target:  5'- gGACUAccucGCGcgCGAgacgGAcguuACGCCGGCa -3'
miRNA:   3'- gCUGGUu---UGCuaGCUa---CU----UGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 28236 0.69 0.885043
Target:  5'- cCGGCguGACGAU-GAUGGuuuccgguGCaACCGGCg -3'
miRNA:   3'- -GCUGguUUGCUAgCUACU--------UG-UGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 1207 0.69 0.884282
Target:  5'- cCGGCCAuccCGAccaUGAUGAACauggacuuccucgGCCGGCu -3'
miRNA:   3'- -GCUGGUuu-GCUa--GCUACUUG-------------UGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 22914 0.7 0.861063
Target:  5'- gGACCAuuCGGUCGcgGAAgACCa-- -3'
miRNA:   3'- gCUGGUuuGCUAGCuaCUUgUGGccg -5'
22701 3' -49.6 NC_005091.1 + 34770 0.7 0.84115
Target:  5'- cCGGCCGcgcgcgucGGCGAUCcgcuucagcggguuGAUGAggGCAuCCGGCg -3'
miRNA:   3'- -GCUGGU--------UUGCUAG--------------CUACU--UGU-GGCCG- -5'
22701 3' -49.6 NC_005091.1 + 50947 0.7 0.834843
Target:  5'- gCGACCGcaaGcgCGGUGcGCACgGGCa -3'
miRNA:   3'- -GCUGGUuugCuaGCUACuUGUGgCCG- -5'
22701 3' -49.6 NC_005091.1 + 8116 0.7 0.825646
Target:  5'- gCGAcCCAGugGG-CGAagGAGC-CCGGCa -3'
miRNA:   3'- -GCU-GGUUugCUaGCUa-CUUGuGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 657 0.7 0.822846
Target:  5'- uCGACCGGGC-AUCGcgGAaaucuacgcggacuGCGCCGcGCg -3'
miRNA:   3'- -GCUGGUUUGcUAGCuaCU--------------UGUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 15413 0.71 0.816237
Target:  5'- aCGuCCGGagacGCGAaaUCGAUGAACACCugaucGGUg -3'
miRNA:   3'- -GCuGGUU----UGCU--AGCUACUUGUGG-----CCG- -5'
22701 3' -49.6 NC_005091.1 + 9775 0.79 0.392911
Target:  5'- gCGGCUGAAggccCGGUCGAUGAGuCGCUGGCc -3'
miRNA:   3'- -GCUGGUUU----GCUAGCUACUU-GUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.