miRNA display CGI


Results 61 - 80 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22701 3' -49.6 NC_005091.1 + 55111 0.67 0.945493
Target:  5'- aGGCCcccaaaguaagcacGAGgGGUCGucagcacgGGAUACCGGCg -3'
miRNA:   3'- gCUGG--------------UUUgCUAGCua------CUUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 22064 0.67 0.942032
Target:  5'- uCGACCc-GCG-UCGGUcGACaguGCCGGCa -3'
miRNA:   3'- -GCUGGuuUGCuAGCUAcUUG---UGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 55058 0.67 0.942032
Target:  5'- cCGGCCGGACGAggggCGcagaaaacgGGACAgCCGcGCg -3'
miRNA:   3'- -GCUGGUUUGCUa---GCua-------CUUGU-GGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 40370 0.67 0.942032
Target:  5'- -uGCCGAGCGGUCGccGGAUguacuaccaucgACCGcGCa -3'
miRNA:   3'- gcUGGUUUGCUAGCuaCUUG------------UGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 13600 0.67 0.936845
Target:  5'- gCGACCcGGCG-UCGAgcagcgacgUGAACGgucUCGGCg -3'
miRNA:   3'- -GCUGGuUUGCuAGCU---------ACUUGU---GGCCG- -5'
22701 3' -49.6 NC_005091.1 + 18987 0.68 0.931372
Target:  5'- gCGACUGGccGCGAugcUCGGcgGAAUcguGCCGGCg -3'
miRNA:   3'- -GCUGGUU--UGCU---AGCUa-CUUG---UGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 50237 0.68 0.92561
Target:  5'- uCGGCCGcgUGAU-GAUGAAgGgCGGCc -3'
miRNA:   3'- -GCUGGUuuGCUAgCUACUUgUgGCCG- -5'
22701 3' -49.6 NC_005091.1 + 41418 0.68 0.925018
Target:  5'- gGAUCAgcucaucAACGAUCGcgGcgUGCCGGUc -3'
miRNA:   3'- gCUGGU-------UUGCUAGCuaCuuGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 14017 0.67 0.946934
Target:  5'- cCGcACCGaaGugGAUCGAcucgucGCGCCGGUa -3'
miRNA:   3'- -GC-UGGU--UugCUAGCUacu---UGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 49273 0.67 0.951555
Target:  5'- -aGCCGcACGucauccgcAUCGGUGggUACUGGUa -3'
miRNA:   3'- gcUGGUuUGC--------UAGCUACuuGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 31678 0.66 0.959968
Target:  5'- -cGCCAAGCagccuUCGcgGGcACGCCGGUg -3'
miRNA:   3'- gcUGGUUUGcu---AGCuaCU-UGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 9775 0.79 0.392911
Target:  5'- gCGGCUGAAggccCGGUCGAUGAGuCGCUGGCc -3'
miRNA:   3'- -GCUGGUUU----GCUAGCUACUU-GUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 25957 0.66 0.973653
Target:  5'- aCGugCAGGCGcaaGccGAACGCCucGGCa -3'
miRNA:   3'- -GCugGUUUGCuagCuaCUUGUGG--CCG- -5'
22701 3' -49.6 NC_005091.1 + 32250 0.66 0.970607
Target:  5'- cCGAuCCGGcCGAUaCGAgcaaGAACGCCacGGCg -3'
miRNA:   3'- -GCU-GGUUuGCUA-GCUa---CUUGUGG--CCG- -5'
22701 3' -49.6 NC_005091.1 + 51056 0.66 0.968662
Target:  5'- aCGACUAu-CGAUCGcuugccgauuugcccGUGcGCACCGcGCu -3'
miRNA:   3'- -GCUGGUuuGCUAGC---------------UACuUGUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 53599 0.66 0.967316
Target:  5'- -uACUGGAUGGUucgcCGAUGAACA-CGGCg -3'
miRNA:   3'- gcUGGUUUGCUA----GCUACUUGUgGCCG- -5'
22701 3' -49.6 NC_005091.1 + 36815 0.66 0.963772
Target:  5'- -uGCCGGACGA-CGuUGAugGCgaCGGCg -3'
miRNA:   3'- gcUGGUUUGCUaGCuACUugUG--GCCG- -5'
22701 3' -49.6 NC_005091.1 + 25720 0.66 0.963772
Target:  5'- gCGGCCAGcucgGCGAUCGGcUGccCGCC-GCa -3'
miRNA:   3'- -GCUGGUU----UGCUAGCU-ACuuGUGGcCG- -5'
22701 3' -49.6 NC_005091.1 + 38515 0.66 0.959968
Target:  5'- aGACCuGACGcaacuuGUCGAaGAGCugaaCGGCg -3'
miRNA:   3'- gCUGGuUUGC------UAGCUaCUUGug--GCCG- -5'
22701 3' -49.6 NC_005091.1 + 16607 0.66 0.959968
Target:  5'- gCGACCGGcuCGGguaucccCGA--AGCGCCGGCa -3'
miRNA:   3'- -GCUGGUUu-GCUa------GCUacUUGUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.