Results 101 - 113 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 22064 | 0.67 | 0.942032 |
Target: 5'- uCGACCc-GCG-UCGGUcGACaguGCCGGCa -3' miRNA: 3'- -GCUGGuuUGCuAGCUAcUUG---UGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 11255 | 0.68 | 0.912573 |
Target: 5'- -aACCAAA-GAUCGuaguUGAaaccaaguucaucGCACCGGCu -3' miRNA: 3'- gcUGGUUUgCUAGCu---ACU-------------UGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 44841 | 0.68 | 0.913222 |
Target: 5'- aCGACCAcGGCGGcCGGcaaGGGCGgCGGCa -3' miRNA: 3'- -GCUGGU-UUGCUaGCUa--CUUGUgGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 39386 | 0.68 | 0.913222 |
Target: 5'- uGGCCGAACGAgauucCGcucUGGcaGCACaCGGCg -3' miRNA: 3'- gCUGGUUUGCUa----GCu--ACU--UGUG-GCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 11757 | 0.68 | 0.91956 |
Target: 5'- -aGCCGcGCcAUCGAgccgcUGAAgGCCGGCg -3' miRNA: 3'- gcUGGUuUGcUAGCU-----ACUUgUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 36764 | 0.68 | 0.922014 |
Target: 5'- gGACCAcGACGuucgguucguucgCGAUGA-CGCUGGCc -3' miRNA: 3'- gCUGGU-UUGCua-----------GCUACUuGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 41418 | 0.68 | 0.925018 |
Target: 5'- gGAUCAgcucaucAACGAUCGcgGcgUGCCGGUc -3' miRNA: 3'- gCUGGU-------UUGCUAGCuaCuuGUGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 50237 | 0.68 | 0.92561 |
Target: 5'- uCGGCCGcgUGAU-GAUGAAgGgCGGCc -3' miRNA: 3'- -GCUGGUuuGCUAgCUACUUgUgGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 18987 | 0.68 | 0.931372 |
Target: 5'- gCGACUGGccGCGAugcUCGGcgGAAUcguGCCGGCg -3' miRNA: 3'- -GCUGGUU--UGCU---AGCUa-CUUG---UGGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 13600 | 0.67 | 0.936845 |
Target: 5'- gCGACCcGGCG-UCGAgcagcgacgUGAACGgucUCGGCg -3' miRNA: 3'- -GCUGGuUUGCuAGCU---------ACUUGU---GGCCG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 40370 | 0.67 | 0.942032 |
Target: 5'- -uGCCGAGCGGUCGccGGAUguacuaccaucgACCGcGCa -3' miRNA: 3'- gcUGGUUUGCUAGCuaCUUG------------UGGC-CG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 55058 | 0.67 | 0.942032 |
Target: 5'- cCGGCCGGACGAggggCGcagaaaacgGGACAgCCGcGCg -3' miRNA: 3'- -GCUGGUUUGCUa---GCua-------CUUGU-GGC-CG- -5' |
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22701 | 3' | -49.6 | NC_005091.1 | + | 56598 | 0.66 | 0.973653 |
Target: 5'- uCGuuCAAAgGGUUGAUGGguuuGCGCCaaGGCg -3' miRNA: 3'- -GCugGUUUgCUAGCUACU----UGUGG--CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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