miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22701 3' -49.6 NC_005091.1 + 11757 0.68 0.91956
Target:  5'- -aGCCGcGCcAUCGAgccgcUGAAgGCCGGCg -3'
miRNA:   3'- gcUGGUuUGcUAGCU-----ACUUgUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 50237 0.68 0.92561
Target:  5'- uCGGCCGcgUGAU-GAUGAAgGgCGGCc -3'
miRNA:   3'- -GCUGGUuuGCUAgCUACUUgUgGCCG- -5'
22701 3' -49.6 NC_005091.1 + 49273 0.67 0.951555
Target:  5'- -aGCCGcACGucauccgcAUCGGUGggUACUGGUa -3'
miRNA:   3'- gcUGGUuUGC--------UAGCUACuuGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 51056 0.66 0.968662
Target:  5'- aCGACUAu-CGAUCGcuugccgauuugcccGUGcGCACCGcGCu -3'
miRNA:   3'- -GCUGGUuuGCUAGC---------------UACuUGUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 46015 0.7 0.861063
Target:  5'- uGGCCu-GCGcAUCGAcgcgGcgcAACACCGGCa -3'
miRNA:   3'- gCUGGuuUGC-UAGCUa---C---UUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 20767 0.69 0.892505
Target:  5'- -uGCUAuaacauuGCGAUCcc-GAACACCGGCa -3'
miRNA:   3'- gcUGGUu------UGCUAGcuaCUUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 13600 0.67 0.936845
Target:  5'- gCGACCcGGCG-UCGAgcagcgacgUGAACGgucUCGGCg -3'
miRNA:   3'- -GCUGGuUUGCuAGCU---------ACUUGU---GGCCG- -5'
22701 3' -49.6 NC_005091.1 + 32250 0.66 0.970607
Target:  5'- cCGAuCCGGcCGAUaCGAgcaaGAACGCCacGGCg -3'
miRNA:   3'- -GCU-GGUUuGCUA-GCUa---CUUGUGG--CCG- -5'
22701 3' -49.6 NC_005091.1 + 11718 0.68 0.909282
Target:  5'- aCGGCau-GCGAUCGGgucucGAACAuuugggcgucuauccCCGGCa -3'
miRNA:   3'- -GCUGguuUGCUAGCUa----CUUGU---------------GGCCG- -5'
22701 3' -49.6 NC_005091.1 + 25957 0.66 0.973653
Target:  5'- aCGugCAGGCGcaaGccGAACGCCucGGCa -3'
miRNA:   3'- -GCugGUUUGCuagCuaCUUGUGG--CCG- -5'
22701 3' -49.6 NC_005091.1 + 18987 0.68 0.931372
Target:  5'- gCGACUGGccGCGAugcUCGGcgGAAUcguGCCGGCg -3'
miRNA:   3'- -GCUGGUU--UGCU---AGCUa-CUUG---UGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 39386 0.68 0.913222
Target:  5'- uGGCCGAACGAgauucCGcucUGGcaGCACaCGGCg -3'
miRNA:   3'- gCUGGUUUGCUa----GCu--ACU--UGUG-GCCG- -5'
22701 3' -49.6 NC_005091.1 + 22064 0.67 0.942032
Target:  5'- uCGACCc-GCG-UCGGUcGACaguGCCGGCa -3'
miRNA:   3'- -GCUGGuuUGCuAGCUAcUUG---UGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 14017 0.67 0.946934
Target:  5'- cCGcACCGaaGugGAUCGAcucgucGCGCCGGUa -3'
miRNA:   3'- -GC-UGGU--UugCUAGCUacu---UGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 38515 0.66 0.959968
Target:  5'- aGACCuGACGcaacuuGUCGAaGAGCugaaCGGCg -3'
miRNA:   3'- gCUGGuUUGC------UAGCUaCUUGug--GCCG- -5'
22701 3' -49.6 NC_005091.1 + 53599 0.66 0.967316
Target:  5'- -uACUGGAUGGUucgcCGAUGAACA-CGGCg -3'
miRNA:   3'- gcUGGUUUGCUA----GCUACUUGUgGCCG- -5'
22701 3' -49.6 NC_005091.1 + 38710 0.7 0.834843
Target:  5'- -cGCCAucaaGAUGAcCGAUGAGCAgUCGGCu -3'
miRNA:   3'- gcUGGU----UUGCUaGCUACUUGU-GGCCG- -5'
22701 3' -49.6 NC_005091.1 + 24175 0.7 0.861063
Target:  5'- aGACCGAACGAUCGcaaccGAaacuuGCGCagauGGCg -3'
miRNA:   3'- gCUGGUUUGCUAGCua---CU-----UGUGg---CCG- -5'
22701 3' -49.6 NC_005091.1 + 44646 0.69 0.869315
Target:  5'- gCGGCCGAgaagGCGcUCGAaGAagACGCgGGCg -3'
miRNA:   3'- -GCUGGUU----UGCuAGCUaCU--UGUGgCCG- -5'
22701 3' -49.6 NC_005091.1 + 50354 0.69 0.885043
Target:  5'- uGGCUgAGACGAUCGccGcAAUGCCGGUc -3'
miRNA:   3'- gCUGG-UUUGCUAGCuaC-UUGUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.