miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22701 3' -49.6 NC_005091.1 + 51056 0.66 0.968662
Target:  5'- aCGACUAu-CGAUCGcuugccgauuugcccGUGcGCACCGcGCu -3'
miRNA:   3'- -GCUGGUuuGCUAGC---------------UACuUGUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 25157 0.77 0.471267
Target:  5'- uGGCCGc-CGAUCGGuUGAACGCCGcGCu -3'
miRNA:   3'- gCUGGUuuGCUAGCU-ACUUGUGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 25720 0.66 0.963772
Target:  5'- gCGGCCAGcucgGCGAUCGGcUGccCGCC-GCa -3'
miRNA:   3'- -GCUGGUU----UGCUAGCU-ACuuGUGGcCG- -5'
22701 3' -49.6 NC_005091.1 + 25211 0.7 0.843818
Target:  5'- gCGGCCGcugcaccGgGGUCGAUGca-GCCGGCg -3'
miRNA:   3'- -GCUGGUu------UgCUAGCUACuugUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 9370 0.74 0.63497
Target:  5'- aCGGCCAGcCGGUCGgcGGcCAgCGGCg -3'
miRNA:   3'- -GCUGGUUuGCUAGCuaCUuGUgGCCG- -5'
22701 3' -49.6 NC_005091.1 + 3333 0.71 0.786844
Target:  5'- cCGAUCAuGCGcggguugaagucAUCGAUcGAGCGgCCGGCg -3'
miRNA:   3'- -GCUGGUuUGC------------UAGCUA-CUUGU-GGCCG- -5'
22701 3' -49.6 NC_005091.1 + 22007 0.7 0.825646
Target:  5'- uCGACCAGACuacgggcaacgaGAUCGuuaccGUGGACG-CGGCg -3'
miRNA:   3'- -GCUGGUUUG------------CUAGC-----UACUUGUgGCCG- -5'
22701 3' -49.6 NC_005091.1 + 44646 0.69 0.869315
Target:  5'- gCGGCCGAgaagGCGcUCGAaGAagACGCgGGCg -3'
miRNA:   3'- -GCUGGUU----UGCuAGCUaCU--UGUGgCCG- -5'
22701 3' -49.6 NC_005091.1 + 50354 0.69 0.885043
Target:  5'- uGGCUgAGACGAUCGccGcAAUGCCGGUc -3'
miRNA:   3'- gCUGG-UUUGCUAGCuaC-UUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 44841 0.68 0.913222
Target:  5'- aCGACCAcGGCGGcCGGcaaGGGCGgCGGCa -3'
miRNA:   3'- -GCUGGU-UUGCUaGCUa--CUUGUgGCCG- -5'
22701 3' -49.6 NC_005091.1 + 36764 0.68 0.922014
Target:  5'- gGACCAcGACGuucgguucguucgCGAUGA-CGCUGGCc -3'
miRNA:   3'- gCUGGU-UUGCua-----------GCUACUuGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 40370 0.67 0.942032
Target:  5'- -uGCCGAGCGGUCGccGGAUguacuaccaucgACCGcGCa -3'
miRNA:   3'- gcUGGUUUGCUAGCuaCUUG------------UGGC-CG- -5'
22701 3' -49.6 NC_005091.1 + 55111 0.67 0.945493
Target:  5'- aGGCCcccaaaguaagcacGAGgGGUCGucagcacgGGAUACCGGCg -3'
miRNA:   3'- gCUGG--------------UUUgCUAGCua------CUUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 31678 0.66 0.959968
Target:  5'- -cGCCAAGCagccuUCGcgGGcACGCCGGUg -3'
miRNA:   3'- gcUGGUUUGcu---AGCuaCU-UGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 31687 0.68 0.931372
Target:  5'- aGACCGGguGCGAUacCGuagccGCGCCGGCc -3'
miRNA:   3'- gCUGGUU--UGCUA--GCuacu-UGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 1463 0.66 0.973653
Target:  5'- -aGCCGGACGAUCc--GGcgGCCGGCc -3'
miRNA:   3'- gcUGGUUUGCUAGcuaCUugUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 57840 0.66 0.973653
Target:  5'- uCGAgCAGcaaucgGCGGUCGAUcAGCGCgcaGGCg -3'
miRNA:   3'- -GCUgGUU------UGCUAGCUAcUUGUGg--CCG- -5'
22701 3' -49.6 NC_005091.1 + 18427 0.66 0.973653
Target:  5'- aGGCCGGACGuguaGUCGAaaugcgGAAuuguCGCCGGg -3'
miRNA:   3'- gCUGGUUUGC----UAGCUa-----CUU----GUGGCCg -5'
22701 3' -49.6 NC_005091.1 + 1251 0.71 0.816237
Target:  5'- gGGCCGGAUG-UCGGaaggcuggggcGAAUACCGGCa -3'
miRNA:   3'- gCUGGUUUGCuAGCUa----------CUUGUGGCCG- -5'
22701 3' -49.6 NC_005091.1 + 41326 0.67 0.942032
Target:  5'- uCGACCGGcacgccGCGAUCGuugAUGAGCugauCCaGCu -3'
miRNA:   3'- -GCUGGUU------UGCUAGC---UACUUGu---GGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.