Results 61 - 80 of 113 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 15683 | 0.71 | 0.776695 |
Target: 5'- gGACCAAACG-UCGuguuuUGAGCcgaACCGGa -3' miRNA: 3'- gCUGGUUUGCuAGCu----ACUUG---UGGCCg -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 40271 | 0.71 | 0.776695 |
Target: 5'- uCGAUgc-GCGGUCGAUGGuaguACAuCCGGCg -3' miRNA: 3'- -GCUGguuUGCUAGCUACU----UGU-GGCCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 25636 | 0.66 | 0.970607 |
Target: 5'- gCGGgCAGcCGAUCGccGAGCugGCCGcGCa -3' miRNA: 3'- -GCUgGUUuGCUAGCuaCUUG--UGGC-CG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 1463 | 0.66 | 0.973653 |
Target: 5'- -aGCCGGACGAUCc--GGcgGCCGGCc -3' miRNA: 3'- gcUGGUUUGCUAGcuaCUugUGGCCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 6587 | 0.68 | 0.92561 |
Target: 5'- aGACaucGCGAagUCGAUGAucgcuCGCgCGGCg -3' miRNA: 3'- gCUGguuUGCU--AGCUACUu----GUG-GCCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 57108 | 0.68 | 0.906599 |
Target: 5'- gCGGCCGAGCGGcUGuauaucGAACGCCaGCu -3' miRNA: 3'- -GCUGGUUUGCUaGCua----CUUGUGGcCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 35352 | 0.69 | 0.899692 |
Target: 5'- aCGACCAGuCGAacuucUCGGUcagcagGAGCACCGauGCg -3' miRNA: 3'- -GCUGGUUuGCU-----AGCUA------CUUGUGGC--CG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 27104 | 0.69 | 0.899692 |
Target: 5'- gGACCAGACGG-CGAaGAuuGCCGcGUa -3' miRNA: 3'- gCUGGUUUGCUaGCUaCUugUGGC-CG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 3486 | 0.69 | 0.898276 |
Target: 5'- uCGACCAGAUGGUCGucucgu-UCGGCu -3' miRNA: 3'- -GCUGGUUUGCUAGCuacuuguGGCCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 10113 | 0.69 | 0.892505 |
Target: 5'- gGACUAccucGCGcgCGAgacgGAcguuACGCCGGCa -3' miRNA: 3'- gCUGGUu---UGCuaGCUa---CU----UGUGGCCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 37226 | 0.66 | 0.969968 |
Target: 5'- gCGGCCGGAagaugucggcgaGGUCGAUGAccaucGCcCCGaGCg -3' miRNA: 3'- -GCUGGUUUg-----------CUAGCUACU-----UGuGGC-CG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 2007 | 0.66 | 0.970607 |
Target: 5'- gCGGCCAugcuggcgaacGACGAauaUGGUGAGCcgcaggggACUGGCg -3' miRNA: 3'- -GCUGGU-----------UUGCUa--GCUACUUG--------UGGCCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 10250 | 0.66 | 0.970607 |
Target: 5'- gGGCCGAucucauCGAacUGAUGGAgGCCGGa -3' miRNA: 3'- gCUGGUUu-----GCUa-GCUACUUgUGGCCg -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 12154 | 0.66 | 0.970607 |
Target: 5'- gGACgAAGCGcgCGu---ACugCGGCg -3' miRNA: 3'- gCUGgUUUGCuaGCuacuUGugGCCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 14416 | 0.66 | 0.970607 |
Target: 5'- gCGugCcuGCGGU-GA-GAGCgACCGGCg -3' miRNA: 3'- -GCugGuuUGCUAgCUaCUUG-UGGCCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 26634 | 0.66 | 0.970607 |
Target: 5'- uCGAguucaCGGGCGGUCGAUcGAGuCGgCGGCc -3' miRNA: 3'- -GCUg----GUUUGCUAGCUA-CUU-GUgGCCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 27731 | 0.66 | 0.970607 |
Target: 5'- cCGACCGG--GAUCG-UGGuGCGCCGuGCu -3' miRNA: 3'- -GCUGGUUugCUAGCuACU-UGUGGC-CG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 446 | 0.66 | 0.973653 |
Target: 5'- uCGAgCAGcaaucgGCGGUCGAUcAGCGCgcaGGCg -3' miRNA: 3'- -GCUgGUU------UGCUAGCUAcUUGUGg--CCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 18427 | 0.66 | 0.973653 |
Target: 5'- aGGCCGGACGuguaGUCGAaaugcgGAAuuguCGCCGGg -3' miRNA: 3'- gCUGGUUUGC----UAGCUa-----CUU----GUGGCCg -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 57840 | 0.66 | 0.973653 |
Target: 5'- uCGAgCAGcaaucgGCGGUCGAUcAGCGCgcaGGCg -3' miRNA: 3'- -GCUgGUU------UGCUAGCUAcUUGUGg--CCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home