Results 21 - 40 of 113 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 9212 | 0.66 | 0.963772 |
Target: 5'- gCGAcCCGAAuCGcgCGGUGuuu-CCGGCg -3' miRNA: 3'- -GCU-GGUUU-GCuaGCUACuuguGGCCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 45979 | 0.66 | 0.963772 |
Target: 5'- aGGCCAAGCu-UCGAggcUGGACGCUGa- -3' miRNA: 3'- gCUGGUUUGcuAGCU---ACUUGUGGCcg -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 39434 | 0.66 | 0.963772 |
Target: 5'- -uGCCAa--GGUCGAUGAACAgUGcGCu -3' miRNA: 3'- gcUGGUuugCUAGCUACUUGUgGC-CG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 8930 | 0.66 | 0.963403 |
Target: 5'- gCGGCCGagcaccugaaaaaGACGcUCGAaGAACGCaaaCGGCc -3' miRNA: 3'- -GCUGGU-------------UUGCuAGCUaCUUGUG---GCCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 31678 | 0.66 | 0.959968 |
Target: 5'- -cGCCAAGCagccuUCGcgGGcACGCCGGUg -3' miRNA: 3'- gcUGGUUUGcu---AGCuaCU-UGUGGCCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 16607 | 0.66 | 0.959968 |
Target: 5'- gCGACCGGcuCGGguaucccCGA--AGCGCCGGCa -3' miRNA: 3'- -GCUGGUUu-GCUa------GCUacUUGUGGCCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 38515 | 0.66 | 0.959968 |
Target: 5'- aGACCuGACGcaacuuGUCGAaGAGCugaaCGGCg -3' miRNA: 3'- gCUGGuUUGC------UAGCUaCUUGug--GCCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 5324 | 0.66 | 0.959968 |
Target: 5'- uCGGCCGAACGccugaaCGAauUGAacgccucgaaGCACCGGa -3' miRNA: 3'- -GCUGGUUUGCua----GCU--ACU----------UGUGGCCg -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 7753 | 0.66 | 0.959968 |
Target: 5'- aGuACCAGuacaaGAUCGA-GAACAUCGaGCg -3' miRNA: 3'- gC-UGGUUug---CUAGCUaCUUGUGGC-CG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 48601 | 0.67 | 0.955898 |
Target: 5'- aCGAUCAAACGaAUCGucuaGugACgCGGCg -3' miRNA: 3'- -GCUGGUUUGC-UAGCuac-UugUG-GCCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 14493 | 0.67 | 0.955898 |
Target: 5'- gGGCUgcuGAACG-UCGGU--GCGCCGGUa -3' miRNA: 3'- gCUGG---UUUGCuAGCUAcuUGUGGCCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 25942 | 0.67 | 0.955898 |
Target: 5'- gCGGCCAGGCGAguacggauucguUCGAguUGAACuuCCGcauuGCa -3' miRNA: 3'- -GCUGGUUUGCU------------AGCU--ACUUGu-GGC----CG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 50977 | 0.67 | 0.955898 |
Target: 5'- uCGG-CAAGCGAUCGAUaGucguGCAUggCGGCg -3' miRNA: 3'- -GCUgGUUUGCUAGCUA-Cu---UGUG--GCCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 56772 | 0.67 | 0.955898 |
Target: 5'- gCGAgCAucuCGGUCGGUuGAuCGCgGGCa -3' miRNA: 3'- -GCUgGUuu-GCUAGCUA-CUuGUGgCCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 9262 | 0.67 | 0.955898 |
Target: 5'- cCGGCCGgcgAAUGGUCGAcugcucgccgcUGGccGCcgACCGGCu -3' miRNA: 3'- -GCUGGU---UUGCUAGCU-----------ACU--UG--UGGCCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 11672 | 0.67 | 0.955898 |
Target: 5'- cCGGCCuucAGCGGcUCGAUG-GCG-CGGCu -3' miRNA: 3'- -GCUGGu--UUGCU-AGCUACuUGUgGCCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 39021 | 0.67 | 0.953325 |
Target: 5'- --cCCAAACaGGUCGAUGAGCcauucaagcuguucCCGGUu -3' miRNA: 3'- gcuGGUUUG-CUAGCUACUUGu-------------GGCCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 49273 | 0.67 | 0.951555 |
Target: 5'- -aGCCGcACGucauccgcAUCGGUGggUACUGGUa -3' miRNA: 3'- gcUGGUuUGC--------UAGCUACuuGUGGCCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 8632 | 0.67 | 0.951555 |
Target: 5'- gGAuUCAGGCGAUC-AUGcAC-CCGGCa -3' miRNA: 3'- gCU-GGUUUGCUAGcUACuUGuGGCCG- -5' |
|||||||
22701 | 3' | -49.6 | NC_005091.1 | + | 14017 | 0.67 | 0.946934 |
Target: 5'- cCGcACCGaaGugGAUCGAcucgucGCGCCGGUa -3' miRNA: 3'- -GC-UGGU--UugCUAGCUacu---UGUGGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home