Results 1 - 20 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22702 | 3' | -50.1 | NC_005091.1 | + | 1947 | 0.67 | 0.9426 |
Target: 5'- aCGCGACGAUGCGGccGCcgugUCGAa- -3' miRNA: 3'- cGCGCUGCUGUGCCa-UGaaa-AGCUcc -5' |
|||||||
22702 | 3' | -50.1 | NC_005091.1 | + | 2139 | 0.73 | 0.662321 |
Target: 5'- aGCGCGuCGGCcgaaGCGGaACUgg-CGAGGa -3' miRNA: 3'- -CGCGCuGCUG----UGCCaUGAaaaGCUCC- -5' |
|||||||
22702 | 3' | -50.1 | NC_005091.1 | + | 3320 | 0.69 | 0.875876 |
Target: 5'- cGCGCGAUugucgaaGGCACGGUuGCUuccggcgugucccuUUUCGAaGGc -3' miRNA: 3'- -CGCGCUG-------CUGUGCCA-UGA--------------AAAGCU-CC- -5' |
|||||||
22702 | 3' | -50.1 | NC_005091.1 | + | 4829 | 0.7 | 0.854661 |
Target: 5'- gGCGCGGCGGCaACGGUcaaGCggg-CGAa- -3' miRNA: 3'- -CGCGCUGCUG-UGCCA---UGaaaaGCUcc -5' |
|||||||
22702 | 3' | -50.1 | NC_005091.1 | + | 5445 | 0.68 | 0.920507 |
Target: 5'- aGCGCGgacaGCGcCAuguguuucCGGUGCU--UCGAGGc -3' miRNA: 3'- -CGCGC----UGCuGU--------GCCAUGAaaAGCUCC- -5' |
|||||||
22702 | 3' | -50.1 | NC_005091.1 | + | 6009 | 0.7 | 0.843441 |
Target: 5'- uGCGUcgucuauguacgagGGCGGCGCGG-ACguucgggcgUUCGAGGa -3' miRNA: 3'- -CGCG--------------CUGCUGUGCCaUGaa-------AAGCUCC- -5' |
|||||||
22702 | 3' | -50.1 | NC_005091.1 | + | 10421 | 0.72 | 0.759567 |
Target: 5'- gGCGCG-CGACACGcgcaGUACUcUUCcGGGa -3' miRNA: 3'- -CGCGCuGCUGUGC----CAUGAaAAGcUCC- -5' |
|||||||
22702 | 3' | -50.1 | NC_005091.1 | + | 13931 | 0.75 | 0.594549 |
Target: 5'- gGCGCGACGAgucgaucCAcuuCGGUGCggacUCGGGGg -3' miRNA: 3'- -CGCGCUGCU-------GU---GCCAUGaaa-AGCUCC- -5' |
|||||||
22702 | 3' | -50.1 | NC_005091.1 | + | 15317 | 0.71 | 0.799834 |
Target: 5'- cGCGCGGCGGCAgCGGgacgGCUa--CGuGGc -3' miRNA: 3'- -CGCGCUGCUGU-GCCa---UGAaaaGCuCC- -5' |
|||||||
22702 | 3' | -50.1 | NC_005091.1 | + | 18948 | 0.69 | 0.886587 |
Target: 5'- cCGgGGCGucuuCACGGUGUUUUUCGAcGGc -3' miRNA: 3'- cGCgCUGCu---GUGCCAUGAAAAGCU-CC- -5' |
|||||||
22702 | 3' | -50.1 | NC_005091.1 | + | 23493 | 0.66 | 0.964001 |
Target: 5'- cGCGCGGCGAUggcgcugcuCGGU-CUgUUCGGcGGc -3' miRNA: 3'- -CGCGCUGCUGu--------GCCAuGAaAAGCU-CC- -5' |
|||||||
22702 | 3' | -50.1 | NC_005091.1 | + | 26569 | 0.67 | 0.947422 |
Target: 5'- uCGCGACGcGCugGGUGagucgUUCGAa- -3' miRNA: 3'- cGCGCUGC-UGugCCAUgaa--AAGCUcc -5' |
|||||||
22702 | 3' | -50.1 | NC_005091.1 | + | 27937 | 0.72 | 0.759567 |
Target: 5'- uGCGCGACGGCcguACGcGUugUg--CGAGa -3' miRNA: 3'- -CGCGCUGCUG---UGC-CAugAaaaGCUCc -5' |
|||||||
22702 | 3' | -50.1 | NC_005091.1 | + | 29065 | 0.66 | 0.97074 |
Target: 5'- gGCGUGACGccuuccaggauGgGCGGUgaGCUUUUUcAGGa -3' miRNA: 3'- -CGCGCUGC-----------UgUGCCA--UGAAAAGcUCC- -5' |
|||||||
22702 | 3' | -50.1 | NC_005091.1 | + | 29942 | 0.73 | 0.706324 |
Target: 5'- aGCGCGACGGCuCGGUGacgUUUCcGGa -3' miRNA: 3'- -CGCGCUGCUGuGCCAUga-AAAGcUCc -5' |
|||||||
22702 | 3' | -50.1 | NC_005091.1 | + | 31803 | 1.14 | 0.002135 |
Target: 5'- aGCGCGACGACACGGUACUUUUCGAGGa -3' miRNA: 3'- -CGCGCUGCUGUGCCAUGAAAAGCUCC- -5' |
|||||||
22702 | 3' | -50.1 | NC_005091.1 | + | 31923 | 0.67 | 0.951969 |
Target: 5'- uCGUGACGACGCGG-GCgaa-CGuGGc -3' miRNA: 3'- cGCGCUGCUGUGCCaUGaaaaGCuCC- -5' |
|||||||
22702 | 3' | -50.1 | NC_005091.1 | + | 33821 | 0.78 | 0.408653 |
Target: 5'- uCGCGAUGACGCGGcGCUUccUCGaAGGg -3' miRNA: 3'- cGCGCUGCUGUGCCaUGAAa-AGC-UCC- -5' |
|||||||
22702 | 3' | -50.1 | NC_005091.1 | + | 33951 | 0.68 | 0.920507 |
Target: 5'- aCGCcgGGCGGCGuCGGUaGCgaaUUCGAGGc -3' miRNA: 3'- cGCG--CUGCUGU-GCCA-UGaa-AAGCUCC- -5' |
|||||||
22702 | 3' | -50.1 | NC_005091.1 | + | 34196 | 0.78 | 0.427711 |
Target: 5'- cGCGCGACuGAUcCGGUucgcGCggUUCGAGGa -3' miRNA: 3'- -CGCGCUG-CUGuGCCA----UGaaAAGCUCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home