miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22702 5' -58.1 NC_005091.1 + 48831 0.66 0.624412
Target:  5'- uGCCGCGUguggcgUGCCCGCaaCG-CAUGGc -3'
miRNA:   3'- uCGGUGCAa-----GCGGGCGcaGCaGUGCU- -5'
22702 5' -58.1 NC_005091.1 + 36793 0.66 0.624412
Target:  5'- cGGCgAgcCGUUCGaCCuCGCGUCGaaGCGGa -3'
miRNA:   3'- -UCGgU--GCAAGC-GG-GCGCAGCagUGCU- -5'
22702 5' -58.1 NC_005091.1 + 15937 0.66 0.621213
Target:  5'- cGUCugGUUCGUCCacuuggcgcucgcgGCGUCcaCGCGAu -3'
miRNA:   3'- uCGGugCAAGCGGG--------------CGCAGcaGUGCU- -5'
22702 5' -58.1 NC_005091.1 + 50603 0.66 0.592493
Target:  5'- cGUCGCGUuauagacgUCGCCUGUGUugaCGUaCGCGGc -3'
miRNA:   3'- uCGGUGCA--------AGCGGGCGCA---GCA-GUGCU- -5'
22702 5' -58.1 NC_005091.1 + 12968 0.66 0.592493
Target:  5'- gGGCCACGgUCGUCCGgGcCGa-GCGGc -3'
miRNA:   3'- -UCGGUGCaAGCGGGCgCaGCagUGCU- -5'
22702 5' -58.1 NC_005091.1 + 44637 0.66 0.581905
Target:  5'- cGGCCuugcCGUacuucuugaugaUCGCCuuCGCGUCGUCcauCGAc -3'
miRNA:   3'- -UCGGu---GCA------------AGCGG--GCGCAGCAGu--GCU- -5'
22702 5' -58.1 NC_005091.1 + 52655 0.66 0.581905
Target:  5'- cGGCU--GUUCGUuaCCGCGUgCGUCGCGc -3'
miRNA:   3'- -UCGGugCAAGCG--GGCGCA-GCAGUGCu -5'
22702 5' -58.1 NC_005091.1 + 46720 0.66 0.571357
Target:  5'- cGCCACaGgaCGUguuggaaggCCGCGUCGUCcCGGa -3'
miRNA:   3'- uCGGUG-CaaGCG---------GGCGCAGCAGuGCU- -5'
22702 5' -58.1 NC_005091.1 + 17416 0.67 0.560855
Target:  5'- cGCUGCGUUCGCCUGCaauaccgaagauGUgGUCuGCGu -3'
miRNA:   3'- uCGGUGCAAGCGGGCG------------CAgCAG-UGCu -5'
22702 5' -58.1 NC_005091.1 + 36016 0.67 0.550407
Target:  5'- cGUCAUcaagUCGCagCGCGUCGaUCACGAc -3'
miRNA:   3'- uCGGUGca--AGCGg-GCGCAGC-AGUGCU- -5'
22702 5' -58.1 NC_005091.1 + 34351 0.67 0.550407
Target:  5'- cGGCCGCGcuugUCGUacugcacgCCGCGUCGaaGCGu -3'
miRNA:   3'- -UCGGUGCa---AGCG--------GGCGCAGCagUGCu -5'
22702 5' -58.1 NC_005091.1 + 1085 0.67 0.529699
Target:  5'- cGCCGagcaGcgCGCCCGCGUCGagCAgGu -3'
miRNA:   3'- uCGGUg---CaaGCGGGCGCAGCa-GUgCu -5'
22702 5' -58.1 NC_005091.1 + 18217 0.67 0.529699
Target:  5'- aGGUCGCGcaUCGCCaCGCG-CaUCGCGAg -3'
miRNA:   3'- -UCGGUGCa-AGCGG-GCGCaGcAGUGCU- -5'
22702 5' -58.1 NC_005091.1 + 42415 0.67 0.529699
Target:  5'- uGCgGCcUUCGCCgauCGgcuCGUCGUCACGAa -3'
miRNA:   3'- uCGgUGcAAGCGG---GC---GCAGCAGUGCU- -5'
22702 5' -58.1 NC_005091.1 + 28185 0.67 0.519451
Target:  5'- cGCCGa---CGCCCGCGauauUCGUCgGCGAg -3'
miRNA:   3'- uCGGUgcaaGCGGGCGC----AGCAG-UGCU- -5'
22702 5' -58.1 NC_005091.1 + 49819 0.67 0.509283
Target:  5'- cGCCGCGUUCGUggcggcuugCGCGUUGagCGCGGc -3'
miRNA:   3'- uCGGUGCAAGCGg--------GCGCAGCa-GUGCU- -5'
22702 5' -58.1 NC_005091.1 + 44544 0.67 0.509283
Target:  5'- cGCCuuCGUcgcCGCCCGCGUCuUCuuCGAg -3'
miRNA:   3'- uCGGu-GCAa--GCGGGCGCAGcAGu-GCU- -5'
22702 5' -58.1 NC_005091.1 + 28140 0.68 0.4992
Target:  5'- cGGCCgGCGUggCGUCCGuCGUCuUCGCGu -3'
miRNA:   3'- -UCGG-UGCAa-GCGGGC-GCAGcAGUGCu -5'
22702 5' -58.1 NC_005091.1 + 23422 0.68 0.489206
Target:  5'- cGCCAUcgcCGCgCGCGUCGcCAUGAu -3'
miRNA:   3'- uCGGUGcaaGCGgGCGCAGCaGUGCU- -5'
22702 5' -58.1 NC_005091.1 + 43204 0.68 0.489206
Target:  5'- cGGCCGagaaaauuaUCGcCCCGC-UCGUCGCGAa -3'
miRNA:   3'- -UCGGUgca------AGC-GGGCGcAGCAGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.