miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22702 5' -58.1 NC_005091.1 + 57985 0.68 0.469506
Target:  5'- cGGCCGCGU--GCCUGCGUUGagCGCu- -3'
miRNA:   3'- -UCGGUGCAagCGGGCGCAGCa-GUGcu -5'
22702 5' -58.1 NC_005091.1 + 16357 0.68 0.469506
Target:  5'- aAGCgACGUggaacgUGCUcggCGCGuUCGUCGCGAg -3'
miRNA:   3'- -UCGgUGCAa-----GCGG---GCGC-AGCAGUGCU- -5'
22702 5' -58.1 NC_005091.1 + 591 0.68 0.469506
Target:  5'- cGGCCGCGU--GCCUGCGUUGagCGCu- -3'
miRNA:   3'- -UCGGUGCAagCGGGCGCAGCa-GUGcu -5'
22702 5' -58.1 NC_005091.1 + 52762 0.68 0.459809
Target:  5'- uGGCCgGCGUgcgCGCCCGUcugGUCGUguCGu -3'
miRNA:   3'- -UCGG-UGCAa--GCGGGCG---CAGCAguGCu -5'
22702 5' -58.1 NC_005091.1 + 7262 0.69 0.422131
Target:  5'- cGCCAucCGUcUUGCUCGUGUCGgCGCGGg -3'
miRNA:   3'- uCGGU--GCA-AGCGGGCGCAGCaGUGCU- -5'
22702 5' -58.1 NC_005091.1 + 34760 0.7 0.352669
Target:  5'- cGGCCAUGUccCGgCCGCGcgCGUCgGCGAu -3'
miRNA:   3'- -UCGGUGCAa-GCgGGCGCa-GCAG-UGCU- -5'
22702 5' -58.1 NC_005091.1 + 22317 0.71 0.321101
Target:  5'- cGUCAgG-UCGCUCGUGUCGUCcggGCGAa -3'
miRNA:   3'- uCGGUgCaAGCGGGCGCAGCAG---UGCU- -5'
22702 5' -58.1 NC_005091.1 + 13818 0.71 0.312798
Target:  5'- cGGCUcggGCgGUUCGCCUGCGUCuuccgugGUCACGu -3'
miRNA:   3'- -UCGG---UG-CAAGCGGGCGCAG-------CAGUGCu -5'
22702 5' -58.1 NC_005091.1 + 54268 0.72 0.298844
Target:  5'- cGCCu--UUUGCCCGUGUCGUCuaaaGCGAa -3'
miRNA:   3'- uCGGugcAAGCGGGCGCAGCAG----UGCU- -5'
22702 5' -58.1 NC_005091.1 + 12455 0.72 0.291695
Target:  5'- cGCCGCcgUCGCacuggCCGCGcUCGUCGCGGu -3'
miRNA:   3'- uCGGUGcaAGCG-----GGCGC-AGCAGUGCU- -5'
22702 5' -58.1 NC_005091.1 + 45588 0.73 0.24538
Target:  5'- gAGCCACGUcuucaacuUCGCCUGCGUUGcUACu- -3'
miRNA:   3'- -UCGGUGCA--------AGCGGGCGCAGCaGUGcu -5'
22702 5' -58.1 NC_005091.1 + 31895 0.74 0.216162
Target:  5'- uGCCACGguccUCGaaaaguaCCGUGUCGUCGCGc -3'
miRNA:   3'- uCGGUGCa---AGCg------GGCGCAGCAGUGCu -5'
22702 5' -58.1 NC_005091.1 + 44213 0.75 0.189481
Target:  5'- uGCgGCGUcuUCGCCUGCGUUGUCuucugcuGCGAg -3'
miRNA:   3'- uCGgUGCA--AGCGGGCGCAGCAG-------UGCU- -5'
22702 5' -58.1 NC_005091.1 + 11336 0.77 0.138248
Target:  5'- uGCCGCGUUCGaCUGCGcaugugCGUCACGGa -3'
miRNA:   3'- uCGGUGCAAGCgGGCGCa-----GCAGUGCU- -5'
22702 5' -58.1 NC_005091.1 + 31840 1.08 0.000739
Target:  5'- cAGCCACGUUCGCCCGCGUCGUCACGAu -3'
miRNA:   3'- -UCGGUGCAAGCGGGCGCAGCAGUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.