miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22703 3' -47.4 NC_005091.1 + 19620 0.66 0.986796
Target:  5'- --cGCUCGgcccGAAAGCGCAGCa--- -3'
miRNA:   3'- uuuCGAGCaac-UUUUUGCGUCGcugu -5'
22703 3' -47.4 NC_005091.1 + 53054 0.66 0.986796
Target:  5'- cGGGGUUCGcUGAu---CGCGGCGAgCAu -3'
miRNA:   3'- -UUUCGAGCaACUuuuuGCGUCGCU-GU- -5'
22703 3' -47.4 NC_005091.1 + 22796 0.66 0.986796
Target:  5'- cGAGCacggaCGUUucGAAGAaccgGCGCGGCGAUAu -3'
miRNA:   3'- uUUCGa----GCAA--CUUUU----UGCGUCGCUGU- -5'
22703 3' -47.4 NC_005091.1 + 50620 0.66 0.984862
Target:  5'- --cGCcugUGUUGAcguACGCGGCGGCc -3'
miRNA:   3'- uuuCGa--GCAACUuuuUGCGUCGCUGu -5'
22703 3' -47.4 NC_005091.1 + 49388 0.66 0.984862
Target:  5'- cGGGGCUCGcgcUGAAc-ACGC-GCGGCAc -3'
miRNA:   3'- -UUUCGAGCa--ACUUuuUGCGuCGCUGU- -5'
22703 3' -47.4 NC_005091.1 + 43183 0.66 0.982719
Target:  5'- --cGCUCGUcGcGAAAGCGCcgggcaAGCGACc -3'
miRNA:   3'- uuuCGAGCAaC-UUUUUGCG------UCGCUGu -5'
22703 3' -47.4 NC_005091.1 + 399 0.66 0.982719
Target:  5'- cAAGCggCGggGAGAGcgcgcgguucucACGCAcGCGACGg -3'
miRNA:   3'- uUUCGa-GCaaCUUUU------------UGCGU-CGCUGU- -5'
22703 3' -47.4 NC_005091.1 + 57793 0.66 0.982719
Target:  5'- cAAGCggCGggGAGAGcgcgcgguucucACGCAcGCGACGg -3'
miRNA:   3'- uUUCGa-GCaaCUUUU------------UGCGU-CGCUGU- -5'
22703 3' -47.4 NC_005091.1 + 17147 0.66 0.977759
Target:  5'- cGAGgUCGa-GAGcacGCGCAGCGGCAu -3'
miRNA:   3'- uUUCgAGCaaCUUuu-UGCGUCGCUGU- -5'
22703 3' -47.4 NC_005091.1 + 18616 0.66 0.977759
Target:  5'- cAGAGCUUGUUGGcu-GCGuCGGUGAa- -3'
miRNA:   3'- -UUUCGAGCAACUuuuUGC-GUCGCUgu -5'
22703 3' -47.4 NC_005091.1 + 4824 0.66 0.977486
Target:  5'- --cGCUCG-------GCGCGGCGGCAa -3'
miRNA:   3'- uuuCGAGCaacuuuuUGCGUCGCUGU- -5'
22703 3' -47.4 NC_005091.1 + 33217 0.67 0.974918
Target:  5'- cGAGGC-CGgcGuaauGCGCGGCGACc -3'
miRNA:   3'- -UUUCGaGCaaCuuuuUGCGUCGCUGu -5'
22703 3' -47.4 NC_005091.1 + 16753 0.67 0.974918
Target:  5'- cGAAGCUCGggUGGAccGCuuuCAGCGGCu -3'
miRNA:   3'- -UUUCGAGCa-ACUUuuUGc--GUCGCUGu -5'
22703 3' -47.4 NC_005091.1 + 13317 0.67 0.974918
Target:  5'- cAAGUUCGUUGcgcGGAuCGCGGCG-CAa -3'
miRNA:   3'- uUUCGAGCAACu--UUUuGCGUCGCuGU- -5'
22703 3' -47.4 NC_005091.1 + 26196 0.67 0.968458
Target:  5'- uGAGaCUgCGcugUGAGAucuuucGACGCGGCGGCAg -3'
miRNA:   3'- uUUC-GA-GCa--ACUUU------UUGCGUCGCUGU- -5'
22703 3' -47.4 NC_005091.1 + 27914 0.67 0.960895
Target:  5'- cAAGCUCGaaguccugaaGAAGGACuCGGCGACGg -3'
miRNA:   3'- uUUCGAGCaa--------CUUUUUGcGUCGCUGU- -5'
22703 3' -47.4 NC_005091.1 + 27470 0.68 0.956679
Target:  5'- gGAAGCacaCGUUcGAGGACGCAGgCGGCc -3'
miRNA:   3'- -UUUCGa--GCAAcUUUUUGCGUC-GCUGu -5'
22703 3' -47.4 NC_005091.1 + 24148 0.68 0.952163
Target:  5'- --cGCagaUGgcGAAAGAUGCAGCGGCGu -3'
miRNA:   3'- uuuCGa--GCaaCUUUUUGCGUCGCUGU- -5'
22703 3' -47.4 NC_005091.1 + 44633 0.69 0.931
Target:  5'- --cGCUCGaa-GAAGACGCGgGCGGCGa -3'
miRNA:   3'- uuuCGAGCaacUUUUUGCGU-CGCUGU- -5'
22703 3' -47.4 NC_005091.1 + 36558 0.7 0.904773
Target:  5'- cAAGCU-GUUGAAGugggauGACuGCGGCGACGc -3'
miRNA:   3'- uUUCGAgCAACUUU------UUG-CGUCGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.