miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22703 5' -55.9 NC_005091.1 + 42328 0.66 0.673832
Target:  5'- --gGCCGCCGuUGUCGucgUAGCCCu-- -3'
miRNA:   3'- aaaCGGUGGC-GCAGUua-GUCGGGcuc -5'
22703 5' -55.9 NC_005091.1 + 26724 0.66 0.673832
Target:  5'- --gGCCGCCGacUCGAUCGaccGCCCGuGa -3'
miRNA:   3'- aaaCGGUGGCgcAGUUAGU---CGGGCuC- -5'
22703 5' -55.9 NC_005091.1 + 49472 0.66 0.651757
Target:  5'- -gUGCCGCgCGUGU---UCAGCgCGAGc -3'
miRNA:   3'- aaACGGUG-GCGCAguuAGUCGgGCUC- -5'
22703 5' -55.9 NC_005091.1 + 27239 0.66 0.651757
Target:  5'- --gGCCAUCaagaggcugGCGUCGcgccgCAGUCCGAGa -3'
miRNA:   3'- aaaCGGUGG---------CGCAGUua---GUCGGGCUC- -5'
22703 5' -55.9 NC_005091.1 + 40551 0.66 0.651757
Target:  5'- --cGCCGCCGCcgaGUCGGUaucccGCgCCGAGc -3'
miRNA:   3'- aaaCGGUGGCG---CAGUUAgu---CG-GGCUC- -5'
22703 5' -55.9 NC_005091.1 + 21307 0.66 0.651757
Target:  5'- --cGCCGCCGCGUacgCGAggCcGCCCGu- -3'
miRNA:   3'- aaaCGGUGGCGCA---GUUa-GuCGGGCuc -5'
22703 5' -55.9 NC_005091.1 + 17063 0.66 0.650651
Target:  5'- -aUGCCGCUGCGcgugcucUCGAccUCGGCgCGAa -3'
miRNA:   3'- aaACGGUGGCGC-------AGUU--AGUCGgGCUc -5'
22703 5' -55.9 NC_005091.1 + 4899 0.66 0.640688
Target:  5'- gUUGCCGCCGCGcCG---AGCgCGAa -3'
miRNA:   3'- aAACGGUGGCGCaGUuagUCGgGCUc -5'
22703 5' -55.9 NC_005091.1 + 14763 0.67 0.607471
Target:  5'- -cUGUCAgUGCGguuGUCGGCCCGGc -3'
miRNA:   3'- aaACGGUgGCGCaguUAGUCGGGCUc -5'
22703 5' -55.9 NC_005091.1 + 34368 0.67 0.59643
Target:  5'- -cUGCaCGCCGCGUCGA--AGCgUGGGc -3'
miRNA:   3'- aaACG-GUGGCGCAGUUagUCGgGCUC- -5'
22703 5' -55.9 NC_005091.1 + 26289 0.67 0.567887
Target:  5'- -cUGCCGCCGCGUCGAaagaucucacagcgCAGUCUcAGc -3'
miRNA:   3'- aaACGGUGGCGCAGUUa-------------GUCGGGcUC- -5'
22703 5' -55.9 NC_005091.1 + 21518 0.67 0.563524
Target:  5'- -gUGCUcuGCCGCGUCGccucggcUUGGUCCGGGg -3'
miRNA:   3'- aaACGG--UGGCGCAGUu------AGUCGGGCUC- -5'
22703 5' -55.9 NC_005091.1 + 10501 0.68 0.53112
Target:  5'- -aUGCgGCCGC-UCAcgGUCAGCCCc-- -3'
miRNA:   3'- aaACGgUGGCGcAGU--UAGUCGGGcuc -5'
22703 5' -55.9 NC_005091.1 + 11495 0.68 0.53112
Target:  5'- --gGCCGCCGCGaaaCAGgggCAGgCCGAa -3'
miRNA:   3'- aaaCGGUGGCGCa--GUUa--GUCgGGCUc -5'
22703 5' -55.9 NC_005091.1 + 56235 0.68 0.509896
Target:  5'- -aUGCaccaCACUGCGaaUCGG-CAGCCCGAGu -3'
miRNA:   3'- aaACG----GUGGCGC--AGUUaGUCGGGCUC- -5'
22703 5' -55.9 NC_005091.1 + 52882 0.69 0.468582
Target:  5'- -cUGCUGCCGCGUg---CGGCCUGAu -3'
miRNA:   3'- aaACGGUGGCGCAguuaGUCGGGCUc -5'
22703 5' -55.9 NC_005091.1 + 10961 0.69 0.448577
Target:  5'- --gGCCGCCGgGUCGAgcuguuuCCCGAGg -3'
miRNA:   3'- aaaCGGUGGCgCAGUUaguc---GGGCUC- -5'
22703 5' -55.9 NC_005091.1 + 2656 0.72 0.307647
Target:  5'- -aUGCCAUCGagaauuugGUCGAUCAGUUCGGGg -3'
miRNA:   3'- aaACGGUGGCg-------CAGUUAGUCGGGCUC- -5'
22703 5' -55.9 NC_005091.1 + 18454 0.72 0.307647
Target:  5'- aUUGUCGCCGgGUCG--UAGUCCGAGc -3'
miRNA:   3'- aAACGGUGGCgCAGUuaGUCGGGCUC- -5'
22703 5' -55.9 NC_005091.1 + 32472 1.07 0.001067
Target:  5'- uUUUGCCACCGCGUCAAUCAGCCCGAGg -3'
miRNA:   3'- -AAACGGUGGCGCAGUUAGUCGGGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.