miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22704 3' -56.2 NC_005091.1 + 32735 1.06 0.001357
Target:  5'- uAUCGACGUGCAUCGCGACUACCCCGAu -3'
miRNA:   3'- -UAGCUGCACGUAGCGCUGAUGGGGCU- -5'
22704 3' -56.2 NC_005091.1 + 23466 0.75 0.208968
Target:  5'- uUCGGCG-GCGcugCGuCGGCUGCCCCGGc -3'
miRNA:   3'- uAGCUGCaCGUa--GC-GCUGAUGGGGCU- -5'
22704 3' -56.2 NC_005091.1 + 26091 0.74 0.244202
Target:  5'- cGUCGGCGUGCAgggCGCGAUUaACCuuGc -3'
miRNA:   3'- -UAGCUGCACGUa--GCGCUGA-UGGggCu -5'
22704 3' -56.2 NC_005091.1 + 50808 0.72 0.321418
Target:  5'- -cCGuCGUGCG-CGCGGCUAUCCgGAg -3'
miRNA:   3'- uaGCuGCACGUaGCGCUGAUGGGgCU- -5'
22704 3' -56.2 NC_005091.1 + 25113 0.71 0.377628
Target:  5'- cAUCGACGcgccggcUGCAUCgacgcccggugcaGCGGCcGCCCCGGa -3'
miRNA:   3'- -UAGCUGC-------ACGUAG-------------CGCUGaUGGGGCU- -5'
22704 3' -56.2 NC_005091.1 + 20949 0.7 0.424856
Target:  5'- -aCGACGUGCugaAUC-CGACUGCCgUCGAa -3'
miRNA:   3'- uaGCUGCACG---UAGcGCUGAUGG-GGCU- -5'
22704 3' -56.2 NC_005091.1 + 16205 0.7 0.462502
Target:  5'- gAUCGG-GUGCAUCucauGCGGCUGgccucguCCCCGAu -3'
miRNA:   3'- -UAGCUgCACGUAG----CGCUGAU-------GGGGCU- -5'
22704 3' -56.2 NC_005091.1 + 35140 0.7 0.46349
Target:  5'- cUUGugGUacGCGUCGCGGCgccGCCgCGAg -3'
miRNA:   3'- uAGCugCA--CGUAGCGCUGa--UGGgGCU- -5'
22704 3' -56.2 NC_005091.1 + 14051 0.69 0.473434
Target:  5'- -aCGACG-GUAUCGCGuaucACUGcgacCCCCGAg -3'
miRNA:   3'- uaGCUGCaCGUAGCGC----UGAU----GGGGCU- -5'
22704 3' -56.2 NC_005091.1 + 52649 0.69 0.493636
Target:  5'- uUCGuuaccGCGUGCGUCGCGcCgAUCCCGu -3'
miRNA:   3'- uAGC-----UGCACGUAGCGCuGaUGGGGCu -5'
22704 3' -56.2 NC_005091.1 + 2304 0.69 0.503884
Target:  5'- -aCGAC--GCAUCGCGACgACgCCGAa -3'
miRNA:   3'- uaGCUGcaCGUAGCGCUGaUGgGGCU- -5'
22704 3' -56.2 NC_005091.1 + 27890 0.68 0.545729
Target:  5'- cUCGGCGacgGag-CGCGugUACCUCGAc -3'
miRNA:   3'- uAGCUGCa--CguaGCGCugAUGGGGCU- -5'
22704 3' -56.2 NC_005091.1 + 57424 0.67 0.599461
Target:  5'- cAUCGACc-GUA-CGCGuACUGCCCCGu -3'
miRNA:   3'- -UAGCUGcaCGUaGCGC-UGAUGGGGCu -5'
22704 3' -56.2 NC_005091.1 + 33642 0.67 0.599461
Target:  5'- -cCGGCG-GCAUCGgGACUucaccaGCCgCGAu -3'
miRNA:   3'- uaGCUGCaCGUAGCgCUGA------UGGgGCU- -5'
22704 3' -56.2 NC_005091.1 + 52125 0.67 0.603803
Target:  5'- -gCGGCGcGUAucUCGCGAUUgaggaagucacgcucGCCCCGAa -3'
miRNA:   3'- uaGCUGCaCGU--AGCGCUGA---------------UGGGGCU- -5'
22704 3' -56.2 NC_005091.1 + 16021 0.67 0.621201
Target:  5'- -cCGACaaGCGUCGUG-CUGCCgCCGGc -3'
miRNA:   3'- uaGCUGcaCGUAGCGCuGAUGG-GGCU- -5'
22704 3' -56.2 NC_005091.1 + 57471 0.67 0.621201
Target:  5'- --aGGCGUGCGcCaCGGCUGCCUCGu -3'
miRNA:   3'- uagCUGCACGUaGcGCUGAUGGGGCu -5'
22704 3' -56.2 NC_005091.1 + 77 0.67 0.621201
Target:  5'- --aGGCGUGCGcCaCGGCUGCCUCGu -3'
miRNA:   3'- uagCUGCACGUaGcGCUGAUGGGGCu -5'
22704 3' -56.2 NC_005091.1 + 2384 0.67 0.621201
Target:  5'- uUCGGCGUcgucgcgauGCGUCGUGGCUucuuGCCaCUGGa -3'
miRNA:   3'- uAGCUGCA---------CGUAGCGCUGA----UGG-GGCU- -5'
22704 3' -56.2 NC_005091.1 + 50665 0.67 0.621201
Target:  5'- -gCGACGcUGUugCGCGACUACCgcaCCGGc -3'
miRNA:   3'- uaGCUGC-ACGuaGCGCUGAUGG---GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.