miRNA display CGI


Results 21 - 28 of 28 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22704 3' -56.2 NC_005091.1 + 77 0.67 0.621201
Target:  5'- --aGGCGUGCGcCaCGGCUGCCUCGu -3'
miRNA:   3'- uagCUGCACGUaGcGCUGAUGGGGCu -5'
22704 3' -56.2 NC_005091.1 + 57471 0.67 0.621201
Target:  5'- --aGGCGUGCGcCaCGGCUGCCUCGu -3'
miRNA:   3'- uagCUGCACGUaGcGCUGAUGGGGCu -5'
22704 3' -56.2 NC_005091.1 + 16021 0.67 0.621201
Target:  5'- -cCGACaaGCGUCGUG-CUGCCgCCGGc -3'
miRNA:   3'- uaGCUGcaCGUAGCGCuGAUGG-GGCU- -5'
22704 3' -56.2 NC_005091.1 + 9085 0.66 0.653859
Target:  5'- -cCGugGgucgGCGUCGUG-CUgaagcgcaACCCCGAu -3'
miRNA:   3'- uaGCugCa---CGUAGCGCuGA--------UGGGGCU- -5'
22704 3' -56.2 NC_005091.1 + 2589 0.66 0.664718
Target:  5'- cUCGAUG-GCAUCGC-ACUgguugGCUCCGGu -3'
miRNA:   3'- uAGCUGCaCGUAGCGcUGA-----UGGGGCU- -5'
22704 3' -56.2 NC_005091.1 + 34184 0.66 0.664718
Target:  5'- uAUCGGCaaUGCcgCGCGACUGaUCCGGu -3'
miRNA:   3'- -UAGCUGc-ACGuaGCGCUGAUgGGGCU- -5'
22704 3' -56.2 NC_005091.1 + 655 0.66 0.696005
Target:  5'- aAUCGACcggGCAUCGCGgaaaucuacgcggACUGCgCCGc -3'
miRNA:   3'- -UAGCUGca-CGUAGCGC-------------UGAUGgGGCu -5'
22704 3' -56.2 NC_005091.1 + 32735 1.06 0.001357
Target:  5'- uAUCGACGUGCAUCGCGACUACCCCGAu -3'
miRNA:   3'- -UAGCUGCACGUAGCGCUGAUGGGGCU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.