miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22705 5' -58.7 NC_005091.1 + 11098 0.66 0.595132
Target:  5'- cCGCCCGGCaaagcgACCCcggcgaagcCGGCaUCAGa -3'
miRNA:   3'- -GCGGGCCGca----UGGGua-------GCCGaAGUCc -5'
22705 5' -58.7 NC_005091.1 + 23525 0.66 0.595132
Target:  5'- gCGUCCGaccauuucuGCGUG-CCAUCGGCggCAGc -3'
miRNA:   3'- -GCGGGC---------CGCAUgGGUAGCCGaaGUCc -5'
22705 5' -58.7 NC_005091.1 + 31593 0.66 0.553202
Target:  5'- --aCCGGCGUGCCCGcgaaGGCUgcuuGGc -3'
miRNA:   3'- gcgGGCCGCAUGGGUag--CCGAagu-CC- -5'
22705 5' -58.7 NC_005091.1 + 28776 0.66 0.542847
Target:  5'- gGcCCCGGCGUgugucgugcGCCCGcagaagGuGCUUCGGGa -3'
miRNA:   3'- gC-GGGCCGCA---------UGGGUag----C-CGAAGUCC- -5'
22705 5' -58.7 NC_005091.1 + 4215 0.67 0.532557
Target:  5'- uGCCCGGCGgcgcGCCCGUCaccguGCcguacgUCAGc -3'
miRNA:   3'- gCGGGCCGCa---UGGGUAGc----CGa-----AGUCc -5'
22705 5' -58.7 NC_005091.1 + 26360 0.67 0.482284
Target:  5'- aGcCCCGGCG-GCCCGcgcgCGGUccugacgggcaUUCAGGc -3'
miRNA:   3'- gC-GGGCCGCaUGGGUa---GCCG-----------AAGUCC- -5'
22705 5' -58.7 NC_005091.1 + 28232 0.68 0.4725
Target:  5'- gCGCCCGGCGUGaCgAUgaUGGUUUCcGGu -3'
miRNA:   3'- -GCGGGCCGCAUgGgUA--GCCGAAGuCC- -5'
22705 5' -58.7 NC_005091.1 + 25072 0.68 0.462818
Target:  5'- aGCgCGGCGUucaACCgAUCGGCggcCAcGGa -3'
miRNA:   3'- gCGgGCCGCA---UGGgUAGCCGaa-GU-CC- -5'
22705 5' -58.7 NC_005091.1 + 14203 0.68 0.453241
Target:  5'- aGCCCGGCG-ACCUccCGGCUa---- -3'
miRNA:   3'- gCGGGCCGCaUGGGuaGCCGAagucc -5'
22705 5' -58.7 NC_005091.1 + 14305 0.68 0.434417
Target:  5'- gGCUCGacCGUGCCCGucacgaugcguaUCGGCUUCGcGGu -3'
miRNA:   3'- gCGGGCc-GCAUGGGU------------AGCCGAAGU-CC- -5'
22705 5' -58.7 NC_005091.1 + 2305 0.69 0.407052
Target:  5'- gGCuuGGCGUcuuCCaCGUCGaGCgUCAGGc -3'
miRNA:   3'- gCGggCCGCAu--GG-GUAGC-CGaAGUCC- -5'
22705 5' -58.7 NC_005091.1 + 45683 0.69 0.407052
Target:  5'- aCGCCCGGCGUGuuCuUCG---UCAGGa -3'
miRNA:   3'- -GCGGGCCGCAUggGuAGCcgaAGUCC- -5'
22705 5' -58.7 NC_005091.1 + 33627 0.7 0.355692
Target:  5'- gGUCCcGCGUcugGCCCggCGGCaUCGGGa -3'
miRNA:   3'- gCGGGcCGCA---UGGGuaGCCGaAGUCC- -5'
22705 5' -58.7 NC_005091.1 + 10923 0.7 0.347587
Target:  5'- aGcCCCGGCGgaaACCCGUCGGggccaaAGGg -3'
miRNA:   3'- gC-GGGCCGCa--UGGGUAGCCgaag--UCC- -5'
22705 5' -58.7 NC_005091.1 + 37165 0.7 0.343585
Target:  5'- gCGCCCGGCGUGuuCAgcuuucgguacuuggCGGCggccugcgauacggUCAGGc -3'
miRNA:   3'- -GCGGGCCGCAUggGUa--------------GCCGa-------------AGUCC- -5'
22705 5' -58.7 NC_005091.1 + 56778 0.72 0.266591
Target:  5'- uGCCCGGCG-AUCUuguagcgGUUGcGCUUCGGGa -3'
miRNA:   3'- gCGGGCCGCaUGGG-------UAGC-CGAAGUCC- -5'
22705 5' -58.7 NC_005091.1 + 19478 0.73 0.24199
Target:  5'- gGCCugCGGCGUGCCCuccgUGGCcugCGGGa -3'
miRNA:   3'- gCGG--GCCGCAUGGGua--GCCGaa-GUCC- -5'
22705 5' -58.7 NC_005091.1 + 18189 0.74 0.192412
Target:  5'- cCGCUucaaCGGCGUGCCguUCGaCUUCAGGu -3'
miRNA:   3'- -GCGG----GCCGCAUGGguAGCcGAAGUCC- -5'
22705 5' -58.7 NC_005091.1 + 26104 0.76 0.144093
Target:  5'- uCGCCaCGGCGUAC--GUCGGCgugCAGGg -3'
miRNA:   3'- -GCGG-GCCGCAUGggUAGCCGaa-GUCC- -5'
22705 5' -58.7 NC_005091.1 + 1484 0.77 0.129455
Target:  5'- gCGCUCGGCaugccGCCCAUCGGCgcgaaCAGGa -3'
miRNA:   3'- -GCGGGCCGca---UGGGUAGCCGaa---GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.