miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22706 5' -57.3 NC_005091.1 + 10794 0.66 0.662852
Target:  5'- gCGCGaa--CGAUCGCgGCCAAGGCGc -3'
miRNA:   3'- aGUGCaucgGCUGGUG-CGGUUCCGCc -5'
22706 5' -57.3 NC_005091.1 + 44852 0.66 0.662852
Target:  5'- gCACGaaGGCaaCGACCACggcgGCCGgcaaGGGCGGc -3'
miRNA:   3'- aGUGCa-UCG--GCUGGUG----CGGU----UCCGCC- -5'
22706 5' -57.3 NC_005091.1 + 16716 0.66 0.662852
Target:  5'- cCGCGUagaguggaauGGCaCGGCUugGC--AGGCGGc -3'
miRNA:   3'- aGUGCA----------UCG-GCUGGugCGguUCCGCC- -5'
22706 5' -57.3 NC_005091.1 + 10101 0.66 0.662852
Target:  5'- -aACGUGGUCG-CCGucgUGCCGgguuccaguucgAGGCGGu -3'
miRNA:   3'- agUGCAUCGGCuGGU---GCGGU------------UCCGCC- -5'
22706 5' -57.3 NC_005091.1 + 17606 0.66 0.656436
Target:  5'- aUguCGUAGCUGACCAccucgaugaucucguCGCCGAuaaucGCGGc -3'
miRNA:   3'- -AguGCAUCGGCUGGU---------------GCGGUUc----CGCC- -5'
22706 5' -57.3 NC_005091.1 + 6777 0.66 0.652155
Target:  5'- -aGCGguguUGGCCGGCCuuaaGgaCGAGGCGGu -3'
miRNA:   3'- agUGC----AUCGGCUGGug--Cg-GUUCCGCC- -5'
22706 5' -57.3 NC_005091.1 + 51949 0.66 0.630717
Target:  5'- aCGCGagUAGCCGAgUGCGCUAcGGCc- -3'
miRNA:   3'- aGUGC--AUCGGCUgGUGCGGUuCCGcc -5'
22706 5' -57.3 NC_005091.1 + 35218 0.66 0.630717
Target:  5'- ---gGUAGUgGGUCACGCCAGcgcGGCGGc -3'
miRNA:   3'- agugCAUCGgCUGGUGCGGUU---CCGCC- -5'
22706 5' -57.3 NC_005091.1 + 20552 0.66 0.630717
Target:  5'- gCACGUAGUCaACCAagaGCCAuauaacGGgGGa -3'
miRNA:   3'- aGUGCAUCGGcUGGUg--CGGUu-----CCgCC- -5'
22706 5' -57.3 NC_005091.1 + 17331 0.66 0.629644
Target:  5'- cCGCGUAgcGCUGGCCGuucagcuucagauUGCCc-GGCGGa -3'
miRNA:   3'- aGUGCAU--CGGCUGGU-------------GCGGuuCCGCC- -5'
22706 5' -57.3 NC_005091.1 + 26848 0.66 0.619995
Target:  5'- aCGCG-AGCCGguGCgGCGUCGcAGGCGu -3'
miRNA:   3'- aGUGCaUCGGC--UGgUGCGGU-UCCGCc -5'
22706 5' -57.3 NC_005091.1 + 25162 0.66 0.61678
Target:  5'- cUC-CGUGGCCGccgaucgguugaacGCCGCGCUu--GCGGc -3'
miRNA:   3'- -AGuGCAUCGGC--------------UGGUGCGGuucCGCC- -5'
22706 5' -57.3 NC_005091.1 + 11470 0.67 0.609284
Target:  5'- -gGCuGUAGCCGAauGCGCCGAGGa-- -3'
miRNA:   3'- agUG-CAUCGGCUggUGCGGUUCCgcc -5'
22706 5' -57.3 NC_005091.1 + 35655 0.67 0.609284
Target:  5'- cCGgGUAGCCGACU-CGCguGcGCGGa -3'
miRNA:   3'- aGUgCAUCGGCUGGuGCGguUcCGCC- -5'
22706 5' -57.3 NC_005091.1 + 14469 0.67 0.598591
Target:  5'- aCGCGUuccucgucGGCUGuCCGgGUCA-GGCGGg -3'
miRNA:   3'- aGUGCA--------UCGGCuGGUgCGGUuCCGCC- -5'
22706 5' -57.3 NC_005091.1 + 42108 0.67 0.598591
Target:  5'- gCGCGUuccgucucGGCCGAUCACaaacggguuGCCccacaccgaAGGGCGGc -3'
miRNA:   3'- aGUGCA--------UCGGCUGGUG---------CGG---------UUCCGCC- -5'
22706 5' -57.3 NC_005091.1 + 33980 0.67 0.595388
Target:  5'- gCACGaAGCUGaACCugaagccgauggguACGCCG-GGCGGc -3'
miRNA:   3'- aGUGCaUCGGC-UGG--------------UGCGGUuCCGCC- -5'
22706 5' -57.3 NC_005091.1 + 41979 0.67 0.587925
Target:  5'- aUCGCGUAGCgaagagGACC-UGCCGAcGuGCGGc -3'
miRNA:   3'- -AGUGCAUCGg-----CUGGuGCGGUU-C-CGCC- -5'
22706 5' -57.3 NC_005091.1 + 8230 0.67 0.566708
Target:  5'- -gACGU-GCUGAUCGCGgUAcuGGGCGGc -3'
miRNA:   3'- agUGCAuCGGCUGGUGCgGU--UCCGCC- -5'
22706 5' -57.3 NC_005091.1 + 14520 0.67 0.566708
Target:  5'- -aGCGU-GCCGcuCgAUGCCGGGGCGa -3'
miRNA:   3'- agUGCAuCGGCu-GgUGCGGUUCCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.