miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22706 5' -57.3 NC_005091.1 + 8230 0.67 0.566708
Target:  5'- -gACGU-GCUGAUCGCGgUAcuGGGCGGc -3'
miRNA:   3'- agUGCAuCGGCUGGUGCgGU--UCCGCC- -5'
22706 5' -57.3 NC_005091.1 + 21630 0.67 0.560379
Target:  5'- aUCAUGgucGCCagcggcuacaccccgGACCAaGCCGAGGCGa -3'
miRNA:   3'- -AGUGCau-CGG---------------CUGGUgCGGUUCCGCc -5'
22706 5' -57.3 NC_005091.1 + 9500 0.67 0.556171
Target:  5'- aUCGCGaGGCCGGCa--GCCGcgauGGCGa -3'
miRNA:   3'- -AGUGCaUCGGCUGgugCGGUu---CCGCc -5'
22706 5' -57.3 NC_005091.1 + 32402 0.68 0.545691
Target:  5'- aUCAa--GGCCGACCgcgaGCGCCAagcAGGCa- -3'
miRNA:   3'- -AGUgcaUCGGCUGG----UGCGGU---UCCGcc -5'
22706 5' -57.3 NC_005091.1 + 22725 0.68 0.535275
Target:  5'- gUACGUcgaGGauaCGACCACGUCcgaacugaagaAGGGCGGc -3'
miRNA:   3'- aGUGCA---UCg--GCUGGUGCGG-----------UUCCGCC- -5'
22706 5' -57.3 NC_005091.1 + 26124 0.68 0.535275
Target:  5'- gCGCGgcgAGCUGAUCGCgcucGCCAcGGCGu -3'
miRNA:   3'- aGUGCa--UCGGCUGGUG----CGGUuCCGCc -5'
22706 5' -57.3 NC_005091.1 + 1360 0.68 0.521842
Target:  5'- uUCGCGUucuucccguggaAGCgCGACguguuccuccuguuCGCGCCGauGGGCGGc -3'
miRNA:   3'- -AGUGCA------------UCG-GCUG--------------GUGCGGU--UCCGCC- -5'
22706 5' -57.3 NC_005091.1 + 12587 0.68 0.514663
Target:  5'- -uGCGUGGCCGAUucgCGCGCCcGGucuCGGa -3'
miRNA:   3'- agUGCAUCGGCUG---GUGCGGuUCc--GCC- -5'
22706 5' -57.3 NC_005091.1 + 16831 0.68 0.504477
Target:  5'- -aGCGUAuuGUCGAUCACGCCAAGcuGCa- -3'
miRNA:   3'- agUGCAU--CGGCUGGUGCGGUUC--CGcc -5'
22706 5' -57.3 NC_005091.1 + 28693 0.68 0.504477
Target:  5'- -uGCGggcGCaCGACaCACGCCGGGGCc- -3'
miRNA:   3'- agUGCau-CG-GCUG-GUGCGGUUCCGcc -5'
22706 5' -57.3 NC_005091.1 + 38153 0.68 0.49438
Target:  5'- aCAUGgcGCUGGCCcUGCCG-GGCGa -3'
miRNA:   3'- aGUGCauCGGCUGGuGCGGUuCCGCc -5'
22706 5' -57.3 NC_005091.1 + 31087 0.68 0.49438
Target:  5'- cCACGUAGCCguaGAUCGuCGCCAuuGCGc -3'
miRNA:   3'- aGUGCAUCGG---CUGGU-GCGGUucCGCc -5'
22706 5' -57.3 NC_005091.1 + 45705 0.68 0.49438
Target:  5'- aCGCGUcGGCCGcgcGCCGCGCC--GGCu- -3'
miRNA:   3'- aGUGCA-UCGGC---UGGUGCGGuuCCGcc -5'
22706 5' -57.3 NC_005091.1 + 49543 0.69 0.47447
Target:  5'- -aAUGUAGaCGGCCGCGUCGgGGGCGu -3'
miRNA:   3'- agUGCAUCgGCUGGUGCGGU-UCCGCc -5'
22706 5' -57.3 NC_005091.1 + 11500 0.69 0.464666
Target:  5'- -gACGUGGCCG-CCGCGaaaCAGGGgcaGGc -3'
miRNA:   3'- agUGCAUCGGCuGGUGCg--GUUCCg--CC- -5'
22706 5' -57.3 NC_005091.1 + 26013 0.69 0.464666
Target:  5'- aUCGCGcccugcacGCCGACgUACGCCGuGGCGa -3'
miRNA:   3'- -AGUGCau------CGGCUG-GUGCGGUuCCGCc -5'
22706 5' -57.3 NC_005091.1 + 18012 0.69 0.454969
Target:  5'- gUCGCGccGGCCGucuACCgcACGaCCGAGGCGa -3'
miRNA:   3'- -AGUGCa-UCGGC---UGG--UGC-GGUUCCGCc -5'
22706 5' -57.3 NC_005091.1 + 51290 0.69 0.449204
Target:  5'- cUCACGUAcgacccuaaaucgucGCCG-UCGCGCCcguGGGCGa -3'
miRNA:   3'- -AGUGCAU---------------CGGCuGGUGCGGu--UCCGCc -5'
22706 5' -57.3 NC_005091.1 + 10135 0.69 0.445382
Target:  5'- -gACGUuacGCCGGCaCGCGCCGAGcGCc- -3'
miRNA:   3'- agUGCAu--CGGCUG-GUGCGGUUC-CGcc -5'
22706 5' -57.3 NC_005091.1 + 39888 0.69 0.43591
Target:  5'- -aACGcGGCCGACCauccggcuGCGCCAacAGGCu- -3'
miRNA:   3'- agUGCaUCGGCUGG--------UGCGGU--UCCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.