miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22706 5' -57.3 NC_005091.1 + 1299 0.7 0.408207
Target:  5'- -gACGUgcggcaagcAGUCGAUCACGCCGGGuGaCGGg -3'
miRNA:   3'- agUGCA---------UCGGCUGGUGCGGUUC-C-GCC- -5'
22706 5' -57.3 NC_005091.1 + 1360 0.68 0.521842
Target:  5'- uUCGCGUucuucccguggaAGCgCGACguguuccuccuguuCGCGCCGauGGGCGGc -3'
miRNA:   3'- -AGUGCA------------UCG-GCUG--------------GUGCGGU--UCCGCC- -5'
22706 5' -57.3 NC_005091.1 + 4902 0.71 0.348038
Target:  5'- aC-CGUuGCCG-CCGCGCCGAGcGCGa -3'
miRNA:   3'- aGuGCAuCGGCuGGUGCGGUUC-CGCc -5'
22706 5' -57.3 NC_005091.1 + 6777 0.66 0.652155
Target:  5'- -aGCGguguUGGCCGGCCuuaaGgaCGAGGCGGu -3'
miRNA:   3'- agUGC----AUCGGCUGGug--Cg-GUUCCGCC- -5'
22706 5' -57.3 NC_005091.1 + 7489 0.72 0.316609
Target:  5'- uUCGgGcAGCuCGACCAaGCCGAGGCGc -3'
miRNA:   3'- -AGUgCaUCG-GCUGGUgCGGUUCCGCc -5'
22706 5' -57.3 NC_005091.1 + 8230 0.67 0.566708
Target:  5'- -gACGU-GCUGAUCGCGgUAcuGGGCGGc -3'
miRNA:   3'- agUGCAuCGGCUGGUGCgGU--UCCGCC- -5'
22706 5' -57.3 NC_005091.1 + 9500 0.67 0.556171
Target:  5'- aUCGCGaGGCCGGCa--GCCGcgauGGCGa -3'
miRNA:   3'- -AGUGCaUCGGCUGgugCGGUu---CCGCc -5'
22706 5' -57.3 NC_005091.1 + 10101 0.66 0.662852
Target:  5'- -aACGUGGUCG-CCGucgUGCCGgguuccaguucgAGGCGGu -3'
miRNA:   3'- agUGCAUCGGCuGGU---GCGGU------------UCCGCC- -5'
22706 5' -57.3 NC_005091.1 + 10135 0.69 0.445382
Target:  5'- -gACGUuacGCCGGCaCGCGCCGAGcGCc- -3'
miRNA:   3'- agUGCAu--CGGCUG-GUGCGGUUC-CGcc -5'
22706 5' -57.3 NC_005091.1 + 10794 0.66 0.662852
Target:  5'- gCGCGaa--CGAUCGCgGCCAAGGCGc -3'
miRNA:   3'- aGUGCaucgGCUGGUG-CGGUUCCGCc -5'
22706 5' -57.3 NC_005091.1 + 11470 0.67 0.609284
Target:  5'- -gGCuGUAGCCGAauGCGCCGAGGa-- -3'
miRNA:   3'- agUG-CAUCGGCUggUGCGGUUCCgcc -5'
22706 5' -57.3 NC_005091.1 + 11500 0.69 0.464666
Target:  5'- -gACGUGGCCG-CCGCGaaaCAGGGgcaGGc -3'
miRNA:   3'- agUGCAUCGGCuGGUGCg--GUUCCg--CC- -5'
22706 5' -57.3 NC_005091.1 + 12587 0.68 0.514663
Target:  5'- -uGCGUGGCCGAUucgCGCGCCcGGucuCGGa -3'
miRNA:   3'- agUGCAUCGGCUG---GUGCGGuUCc--GCC- -5'
22706 5' -57.3 NC_005091.1 + 14469 0.67 0.598591
Target:  5'- aCGCGUuccucgucGGCUGuCCGgGUCA-GGCGGg -3'
miRNA:   3'- aGUGCA--------UCGGCuGGUgCGGUuCCGCC- -5'
22706 5' -57.3 NC_005091.1 + 14520 0.67 0.566708
Target:  5'- -aGCGU-GCCGcuCgAUGCCGGGGCGa -3'
miRNA:   3'- agUGCAuCGGCu-GgUGCGGUUCCGCc -5'
22706 5' -57.3 NC_005091.1 + 15232 0.72 0.324261
Target:  5'- cCACGUAGCCGucCCGCuGCCGccGCGc -3'
miRNA:   3'- aGUGCAUCGGCu-GGUG-CGGUucCGCc -5'
22706 5' -57.3 NC_005091.1 + 16716 0.66 0.662852
Target:  5'- cCGCGUagaguggaauGGCaCGGCUugGC--AGGCGGc -3'
miRNA:   3'- aGUGCA----------UCG-GCUGGugCGguUCCGCC- -5'
22706 5' -57.3 NC_005091.1 + 16831 0.68 0.504477
Target:  5'- -aGCGUAuuGUCGAUCACGCCAAGcuGCa- -3'
miRNA:   3'- agUGCAU--CGGCUGGUGCGGUUC--CGcc -5'
22706 5' -57.3 NC_005091.1 + 17331 0.66 0.629644
Target:  5'- cCGCGUAgcGCUGGCCGuucagcuucagauUGCCc-GGCGGa -3'
miRNA:   3'- aGUGCAU--CGGCUGGU-------------GCGGuuCCGCC- -5'
22706 5' -57.3 NC_005091.1 + 17606 0.66 0.656436
Target:  5'- aUguCGUAGCUGACCAccucgaugaucucguCGCCGAuaaucGCGGc -3'
miRNA:   3'- -AguGCAUCGGCUGGU---------------GCGGUUc----CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.