miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22706 5' -57.3 NC_005091.1 + 42108 0.67 0.598591
Target:  5'- gCGCGUuccgucucGGCCGAUCACaaacggguuGCCccacaccgaAGGGCGGc -3'
miRNA:   3'- aGUGCA--------UCGGCUGGUG---------CGG---------UUCCGCC- -5'
22706 5' -57.3 NC_005091.1 + 38153 0.68 0.49438
Target:  5'- aCAUGgcGCUGGCCcUGCCG-GGCGa -3'
miRNA:   3'- aGUGCauCGGCUGGuGCGGUuCCGCc -5'
22706 5' -57.3 NC_005091.1 + 45705 0.68 0.49438
Target:  5'- aCGCGUcGGCCGcgcGCCGCGCC--GGCu- -3'
miRNA:   3'- aGUGCA-UCGGC---UGGUGCGGuuCCGcc -5'
22706 5' -57.3 NC_005091.1 + 16831 0.68 0.504477
Target:  5'- -aGCGUAuuGUCGAUCACGCCAAGcuGCa- -3'
miRNA:   3'- agUGCAU--CGGCUGGUGCGGUUC--CGcc -5'
22706 5' -57.3 NC_005091.1 + 28693 0.68 0.504477
Target:  5'- -uGCGggcGCaCGACaCACGCCGGGGCc- -3'
miRNA:   3'- agUGCau-CG-GCUG-GUGCGGUUCCGcc -5'
22706 5' -57.3 NC_005091.1 + 12587 0.68 0.514663
Target:  5'- -uGCGUGGCCGAUucgCGCGCCcGGucuCGGa -3'
miRNA:   3'- agUGCAUCGGCUG---GUGCGGuUCc--GCC- -5'
22706 5' -57.3 NC_005091.1 + 1360 0.68 0.521842
Target:  5'- uUCGCGUucuucccguggaAGCgCGACguguuccuccuguuCGCGCCGauGGGCGGc -3'
miRNA:   3'- -AGUGCA------------UCG-GCUG--------------GUGCGGU--UCCGCC- -5'
22706 5' -57.3 NC_005091.1 + 8230 0.67 0.566708
Target:  5'- -gACGU-GCUGAUCGCGgUAcuGGGCGGc -3'
miRNA:   3'- agUGCAuCGGCUGGUGCgGU--UCCGCC- -5'
22706 5' -57.3 NC_005091.1 + 14520 0.67 0.566708
Target:  5'- -aGCGU-GCCGcuCgAUGCCGGGGCGa -3'
miRNA:   3'- agUGCAuCGGCu-GgUGCGGUUCCGCc -5'
22706 5' -57.3 NC_005091.1 + 31087 0.68 0.49438
Target:  5'- cCACGUAGCCguaGAUCGuCGCCAuuGCGc -3'
miRNA:   3'- aGUGCAUCGG---CUGGU-GCGGUucCGCc -5'
22706 5' -57.3 NC_005091.1 + 49543 0.69 0.47447
Target:  5'- -aAUGUAGaCGGCCGCGUCGgGGGCGu -3'
miRNA:   3'- agUGCAUCgGCUGGUGCGGU-UCCGCc -5'
22706 5' -57.3 NC_005091.1 + 26013 0.69 0.464666
Target:  5'- aUCGCGcccugcacGCCGACgUACGCCGuGGCGa -3'
miRNA:   3'- -AGUGCau------CGGCUG-GUGCGGUuCCGCc -5'
22706 5' -57.3 NC_005091.1 + 34716 0.75 0.201695
Target:  5'- gUCGCGcugaUAGCCGACCGCGCCGuucGUGa -3'
miRNA:   3'- -AGUGC----AUCGGCUGGUGCGGUuc-CGCc -5'
22706 5' -57.3 NC_005091.1 + 25244 0.72 0.309094
Target:  5'- gCACGaGGCCGAUCACGUCGcccacGGCGu -3'
miRNA:   3'- aGUGCaUCGGCUGGUGCGGUu----CCGCc -5'
22706 5' -57.3 NC_005091.1 + 15232 0.72 0.324261
Target:  5'- cCACGUAGCCGucCCGCuGCCGccGCGc -3'
miRNA:   3'- aGUGCAUCGGCu-GGUG-CGGUucCGCc -5'
22706 5' -57.3 NC_005091.1 + 39981 0.71 0.381632
Target:  5'- aCGCGUcGCCGAUCuuGCgCAGGGUGa -3'
miRNA:   3'- aGUGCAuCGGCUGGugCG-GUUCCGCc -5'
22706 5' -57.3 NC_005091.1 + 39287 0.7 0.390361
Target:  5'- aCAUGUAcGCCGugUGCuGCCAGaGCGGa -3'
miRNA:   3'- aGUGCAU-CGGCugGUG-CGGUUcCGCC- -5'
22706 5' -57.3 NC_005091.1 + 1299 0.7 0.408207
Target:  5'- -gACGUgcggcaagcAGUCGAUCACGCCGGGuGaCGGg -3'
miRNA:   3'- agUGCA---------UCGGCUGGUGCGGUUC-C-GCC- -5'
22706 5' -57.3 NC_005091.1 + 39888 0.69 0.43591
Target:  5'- -aACGcGGCCGACCauccggcuGCGCCAacAGGCu- -3'
miRNA:   3'- agUGCaUCGGCUGG--------UGCGGU--UCCGcc -5'
22706 5' -57.3 NC_005091.1 + 10135 0.69 0.445382
Target:  5'- -gACGUuacGCCGGCaCGCGCCGAGcGCc- -3'
miRNA:   3'- agUGCAu--CGGCUG-GUGCGGUUC-CGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.