Results 1 - 20 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22707 | 5' | -58.1 | NC_005091.1 | + | 494 | 0.66 | 0.639385 |
Target: 5'- gUCGCGugcgugagaaccGCGCGCUcUCc---CCGCCGCu -3' miRNA: 3'- -GGCGC------------UGCGCGGaAGuucaGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 43178 | 0.66 | 0.639385 |
Target: 5'- gUCGCGAaaGCGCCgggCAAGcgaccuuggcUCCuGUCGCa -3' miRNA: 3'- -GGCGCUg-CGCGGaa-GUUC----------AGG-CGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 15656 | 0.66 | 0.639385 |
Target: 5'- aCCaGUGGCcCGCUgcgAAGUCCGuuGCg -3' miRNA: 3'- -GG-CGCUGcGCGGaagUUCAGGCggCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 53175 | 0.66 | 0.639385 |
Target: 5'- gCGCgGGCGCgaGCCUUCcGGugcaUCCGCC-Ca -3' miRNA: 3'- gGCG-CUGCG--CGGAAGuUC----AGGCGGcG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 57888 | 0.66 | 0.639385 |
Target: 5'- gUCGCGugcgugagaaccGCGCGCUcUCc---CCGCCGCu -3' miRNA: 3'- -GGCGC------------UGCGCGGaAGuucaGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 17904 | 0.66 | 0.639385 |
Target: 5'- gCCGUGGCGCGCaagccgaauauCUUCucG-CUGUCGUa -3' miRNA: 3'- -GGCGCUGCGCG-----------GAAGuuCaGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 27708 | 0.66 | 0.635144 |
Target: 5'- cCCGC-ACGCGCagggucuCUUCGccgaccgggaucguGGUgCGCCGUg -3' miRNA: 3'- -GGCGcUGCGCG-------GAAGU--------------UCAgGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 13997 | 0.66 | 0.633022 |
Target: 5'- aCCGCccguuccggagaucGCGCGCCa-CAuaUCCGCCGUg -3' miRNA: 3'- -GGCGc-------------UGCGCGGaaGUucAGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 10867 | 0.66 | 0.62878 |
Target: 5'- gCCGCGAucguuCGCGCacUCug--CUGCCGCu -3' miRNA: 3'- -GGCGCU-----GCGCGgaAGuucaGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 14430 | 0.66 | 0.62878 |
Target: 5'- aCGCGACGC-CUaUCGA-UUCGCCGg -3' miRNA: 3'- gGCGCUGCGcGGaAGUUcAGGCGGCg -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 41025 | 0.66 | 0.62878 |
Target: 5'- gCGgGACGCgGUgUUCAGGUUCacaaccucgGCCGUa -3' miRNA: 3'- gGCgCUGCG-CGgAAGUUCAGG---------CGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 20024 | 0.66 | 0.62878 |
Target: 5'- aUGCGAgGCGC-----AGaCCGCCGCg -3' miRNA: 3'- gGCGCUgCGCGgaaguUCaGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 40508 | 0.66 | 0.62878 |
Target: 5'- aCCGCGAgGCGUacccCGAGgucCCGCaGCu -3' miRNA: 3'- -GGCGCUgCGCGgaa-GUUCa--GGCGgCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 24315 | 0.66 | 0.62878 |
Target: 5'- aUCGCGGCGauaggcugGCCgUCGAccGUCgUGCCGCc -3' miRNA: 3'- -GGCGCUGCg-------CGGaAGUU--CAG-GCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 1294 | 0.66 | 0.617118 |
Target: 5'- uUCGCGACGUGCgg-CAAGcagucgaUCaCGCCGg -3' miRNA: 3'- -GGCGCUGCGCGgaaGUUC-------AG-GCGGCg -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 54083 | 0.66 | 0.607587 |
Target: 5'- cUCGauuCGCGCCUugUCGcguucGGUCgCGCCGUg -3' miRNA: 3'- -GGCgcuGCGCGGA--AGU-----UCAG-GCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 32423 | 0.66 | 0.607587 |
Target: 5'- gCCGcCGAacgcCGUGCUgcuaUCAAGgCCGaCCGCg -3' miRNA: 3'- -GGC-GCU----GCGCGGa---AGUUCaGGC-GGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 51985 | 0.66 | 0.60547 |
Target: 5'- uUCGUGcCGCGCCUgauggguuacgaCGAG-CCGUCGUu -3' miRNA: 3'- -GGCGCuGCGCGGAa-----------GUUCaGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 16264 | 0.66 | 0.597015 |
Target: 5'- cUCGCGAcgaaCGCGCCgagCAcGUUCcacgucgcuugGCCGCg -3' miRNA: 3'- -GGCGCU----GCGCGGaa-GUuCAGG-----------CGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 47424 | 0.66 | 0.597015 |
Target: 5'- -aGCGgcaGCGCGUCUUUgAAGUUCGUCaGCa -3' miRNA: 3'- ggCGC---UGCGCGGAAG-UUCAGGCGG-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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