miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22707 5' -58.1 NC_005091.1 + 1294 0.66 0.617118
Target:  5'- uUCGCGACGUGCgg-CAAGcagucgaUCaCGCCGg -3'
miRNA:   3'- -GGCGCUGCGCGgaaGUUC-------AG-GCGGCg -5'
22707 5' -58.1 NC_005091.1 + 27708 0.66 0.635144
Target:  5'- cCCGC-ACGCGCagggucuCUUCGccgaccgggaucguGGUgCGCCGUg -3'
miRNA:   3'- -GGCGcUGCGCG-------GAAGU--------------UCAgGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 53175 0.66 0.639385
Target:  5'- gCGCgGGCGCgaGCCUUCcGGugcaUCCGCC-Ca -3'
miRNA:   3'- gGCG-CUGCG--CGGAAGuUC----AGGCGGcG- -5'
22707 5' -58.1 NC_005091.1 + 20024 0.66 0.62878
Target:  5'- aUGCGAgGCGC-----AGaCCGCCGCg -3'
miRNA:   3'- gGCGCUgCGCGgaaguUCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 46677 0.67 0.555083
Target:  5'- aCGCGAaGCGCCUUUAA-UUCGgCGUu -3'
miRNA:   3'- gGCGCUgCGCGGAAGUUcAGGCgGCG- -5'
22707 5' -58.1 NC_005091.1 + 41988 0.67 0.555083
Target:  5'- gCCGUGGCaCG-CUUCAGGUgCGCagaaGCa -3'
miRNA:   3'- -GGCGCUGcGCgGAAGUUCAgGCGg---CG- -5'
22707 5' -58.1 NC_005091.1 + 28807 0.67 0.555083
Target:  5'- gCCGaGGCGCaCCUgCAcGUCCGCCa- -3'
miRNA:   3'- -GGCgCUGCGcGGAaGUuCAGGCGGcg -5'
22707 5' -58.1 NC_005091.1 + 29500 0.67 0.534429
Target:  5'- aCGCuGGCGCGCgccgaucacagCUUCGAGgUCGuuGCg -3'
miRNA:   3'- gGCG-CUGCGCG-----------GAAGUUCaGGCggCG- -5'
22707 5' -58.1 NC_005091.1 + 34450 0.67 0.534429
Target:  5'- gUCGCGuACG-GCC----GGUUCGCCGCg -3'
miRNA:   3'- -GGCGC-UGCgCGGaaguUCAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 48620 0.67 0.534429
Target:  5'- -aGUGACGCGgCgaCAccaacacgcagcAGcCCGCCGCg -3'
miRNA:   3'- ggCGCUGCGCgGaaGU------------UCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 18188 0.67 0.533404
Target:  5'- aCCGCuucaacGGCGUGCCguucgacUUCAGGUCgCGCauCGCc -3'
miRNA:   3'- -GGCG------CUGCGCGG-------AAGUUCAG-GCG--GCG- -5'
22707 5' -58.1 NC_005091.1 + 46460 0.67 0.544725
Target:  5'- -gGCGACGC-UCgaCAAG-CCGUCGCg -3'
miRNA:   3'- ggCGCUGCGcGGaaGUUCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 2311 0.67 0.555083
Target:  5'- aUCGCGACGaCGCCga-AGGU-CGCCu- -3'
miRNA:   3'- -GGCGCUGC-GCGGaagUUCAgGCGGcg -5'
22707 5' -58.1 NC_005091.1 + 26470 0.67 0.565498
Target:  5'- gCCGCagcaGAC-CGCCUgaaugcccgUCAGGaCCGCgCGCg -3'
miRNA:   3'- -GGCG----CUGcGCGGA---------AGUUCaGGCG-GCG- -5'
22707 5' -58.1 NC_005091.1 + 13338 0.67 0.565498
Target:  5'- gCCGUuugucGAUGCgGCCaaCAAGUUCGuuGCg -3'
miRNA:   3'- -GGCG-----CUGCG-CGGaaGUUCAGGCggCG- -5'
22707 5' -58.1 NC_005091.1 + 52127 0.67 0.575963
Target:  5'- gCGCGGCGCGUaucUCGcgauugaggaAGUCaCGCuCGCc -3'
miRNA:   3'- gGCGCUGCGCGga-AGU----------UCAG-GCG-GCG- -5'
22707 5' -58.1 NC_005091.1 + 13567 0.67 0.575963
Target:  5'- uCgGCGGCGCaccgucGCCaUUCGAGUaUCGCgGCc -3'
miRNA:   3'- -GgCGCUGCG------CGG-AAGUUCA-GGCGgCG- -5'
22707 5' -58.1 NC_005091.1 + 41738 0.67 0.574915
Target:  5'- cCCGCuugauGACGUucggGUCUUCGAGcgccucgcgaacuUCCGCCGg -3'
miRNA:   3'- -GGCG-----CUGCG----CGGAAGUUC-------------AGGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 33716 0.67 0.575963
Target:  5'- uCgGCGcacaucuucuuGCGC-CCUUCGAGgaagCGCCGCg -3'
miRNA:   3'- -GgCGC-----------UGCGcGGAAGUUCag--GCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 24776 0.67 0.574915
Target:  5'- uCUGCGACGUuaucgagGCCg--AGGaauUCCGCCGUg -3'
miRNA:   3'- -GGCGCUGCG-------CGGaagUUC---AGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.