Results 41 - 60 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
22707 | 5' | -58.1 | NC_005091.1 | + | 52127 | 0.67 | 0.575963 |
Target: 5'- gCGCGGCGCGUaucUCGcgauugaggaAGUCaCGCuCGCc -3' miRNA: 3'- gGCGCUGCGCGga-AGU----------UCAG-GCG-GCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 28807 | 0.67 | 0.555083 |
Target: 5'- gCCGaGGCGCaCCUgCAcGUCCGCCa- -3' miRNA: 3'- -GGCgCUGCGcGGAaGUuCAGGCGGcg -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 13567 | 0.67 | 0.575963 |
Target: 5'- uCgGCGGCGCaccgucGCCaUUCGAGUaUCGCgGCc -3' miRNA: 3'- -GgCGCUGCG------CGG-AAGUUCA-GGCGgCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 22441 | 0.68 | 0.484113 |
Target: 5'- gCGCGAUcCGCCuUUCGGGUCauCUGCg -3' miRNA: 3'- gGCGCUGcGCGG-AAGUUCAGgcGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 34773 | 0.68 | 0.503986 |
Target: 5'- gCCGCG-CGCGUCggCGA-UCCGCUucaGCg -3' miRNA: 3'- -GGCGCuGCGCGGaaGUUcAGGCGG---CG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 11307 | 0.68 | 0.474318 |
Target: 5'- uUCGCGGCuucaaCGCCUugUUGAGcggCUGCCGCg -3' miRNA: 3'- -GGCGCUGc----GCGGA--AGUUCa--GGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 51502 | 0.68 | 0.514055 |
Target: 5'- gCUGCG-CGUGCagucgcgaUUCAAG-CUGCCGUa -3' miRNA: 3'- -GGCGCuGCGCGg-------AAGUUCaGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 26744 | 0.68 | 0.494004 |
Target: 5'- gCGUGAUGCGCUcaacgcCGGG-CCGCCGa -3' miRNA: 3'- gGCGCUGCGCGGaa----GUUCaGGCGGCg -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 22840 | 0.68 | 0.484113 |
Target: 5'- -aGCGcACGCGCCUgaa----CGCCGCg -3' miRNA: 3'- ggCGC-UGCGCGGAaguucagGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 13237 | 0.68 | 0.503986 |
Target: 5'- gCCGCGAucCGCGCaa-CGAacuuGUUgGCCGCa -3' miRNA: 3'- -GGCGCU--GCGCGgaaGUU----CAGgCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 49553 | 0.68 | 0.503986 |
Target: 5'- gCCGCGucggGgGCGUCUUCGua-CCGCCuGCg -3' miRNA: 3'- -GGCGC----UgCGCGGAAGUucaGGCGG-CG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 4217 | 0.68 | 0.494004 |
Target: 5'- cCCgGCGGCGCGCCcgUCAccg-UGCCGUa -3' miRNA: 3'- -GG-CGCUGCGCGGa-AGUucagGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 53549 | 0.68 | 0.494004 |
Target: 5'- aUGC-ACGCGCCUUCuaccUCGUCGCa -3' miRNA: 3'- gGCGcUGCGCGGAAGuucaGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 31707 | 0.68 | 0.494004 |
Target: 5'- gCCGCGcCGgcCGCCUUCGGcUgCGCCGa -3' miRNA: 3'- -GGCGCuGC--GCGGAAGUUcAgGCGGCg -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 26037 | 0.68 | 0.474318 |
Target: 5'- gCCGUGGCgaGCGCgaUC-AGcUCGCCGCg -3' miRNA: 3'- -GGCGCUG--CGCGgaAGuUCaGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 22145 | 0.69 | 0.426923 |
Target: 5'- gCGUGACGCGCCcgCGcAGUgCGUacaGCa -3' miRNA: 3'- gGCGCUGCGCGGaaGU-UCAgGCGg--CG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 24537 | 0.69 | 0.436179 |
Target: 5'- uCCGCGAUGuCGUa--CAAG-CCGCCGg -3' miRNA: 3'- -GGCGCUGC-GCGgaaGUUCaGGCGGCg -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 36100 | 0.69 | 0.464623 |
Target: 5'- uCgGCG-CGCGCCUUCAGcGUCU-CCGg -3' miRNA: 3'- -GgCGCuGCGCGGAAGUU-CAGGcGGCg -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 19527 | 0.69 | 0.464623 |
Target: 5'- uUCGCGGgguccgguugcUGCGCUUUCGGGccgagcgCCGCCGa -3' miRNA: 3'- -GGCGCU-----------GCGCGGAAGUUCa------GGCGGCg -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 54938 | 0.69 | 0.455033 |
Target: 5'- gCCGCaACGCGCUcgcCAAG--CGCCGCg -3' miRNA: 3'- -GGCGcUGCGCGGaa-GUUCagGCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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