miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22707 5' -58.1 NC_005091.1 + 34862 1.12 0.000437
Target:  5'- gCCGCGACGCGCCUUCAAGUCCGCCGCc -3'
miRNA:   3'- -GGCGCUGCGCGGAAGUUCAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 52059 0.86 0.035352
Target:  5'- aCGCGcCGCGCgCUUCGAGauauUCCGCCGCa -3'
miRNA:   3'- gGCGCuGCGCG-GAAGUUC----AGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 26568 0.79 0.099301
Target:  5'- uUCGCGACGCGCUgggugagucgUUCgAAGUCCcgGCCGCc -3'
miRNA:   3'- -GGCGCUGCGCGG----------AAG-UUCAGG--CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 36317 0.76 0.156952
Target:  5'- gUCGCGGCGUGCCgacccgcuugUCA--UCCGCCGUc -3'
miRNA:   3'- -GGCGCUGCGCGGa---------AGUucAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 34160 0.75 0.178976
Target:  5'- aCGCGGC-CGCUaUCGAGUCCgagcuGCCGCc -3'
miRNA:   3'- gGCGCUGcGCGGaAGUUCAGG-----CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 20270 0.73 0.26859
Target:  5'- aCGCGuCGcCGCUUUgCGAGUagCCGCCGUg -3'
miRNA:   3'- gGCGCuGC-GCGGAA-GUUCA--GGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 25469 0.72 0.275251
Target:  5'- uUCGCgGACGCGUggacCAAGUUCGCCGUc -3'
miRNA:   3'- -GGCG-CUGCGCGgaa-GUUCAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 52793 0.72 0.288968
Target:  5'- aCGCGGCG-GCgaUCAGG-CCGCaCGCg -3'
miRNA:   3'- gGCGCUGCgCGgaAGUUCaGGCG-GCG- -5'
22707 5' -58.1 NC_005091.1 + 21864 0.72 0.303215
Target:  5'- aCGaGACGCG-CUUCAGGUCCGagGCg -3'
miRNA:   3'- gGCgCUGCGCgGAAGUUCAGGCggCG- -5'
22707 5' -58.1 NC_005091.1 + 44774 0.71 0.317997
Target:  5'- gCCGUGGucguugccuuCGUGCCUUCGGccgccuugCCGCCGCc -3'
miRNA:   3'- -GGCGCU----------GCGCGGAAGUUca------GGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 35216 0.71 0.341174
Target:  5'- gCCGCGACGCGUaccaCAAGcugcugaCCGgCCGCu -3'
miRNA:   3'- -GGCGCUGCGCGgaa-GUUCa------GGC-GGCG- -5'
22707 5' -58.1 NC_005091.1 + 16213 0.71 0.349167
Target:  5'- cCCGcCGuCGCGCCcggaUCAGGgacgaggCCGCCGg -3'
miRNA:   3'- -GGC-GCuGCGCGGa---AGUUCa------GGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 44558 0.71 0.341174
Target:  5'- cCCGCGucuucuucgaGCGCCUUC---UCgGCCGCg -3'
miRNA:   3'- -GGCGCug--------CGCGGAAGuucAGgCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 35152 0.7 0.382453
Target:  5'- gUCGCGGCGcCGCCgcgAGGUaCUGCCGg -3'
miRNA:   3'- -GGCGCUGC-GCGGaagUUCA-GGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 52813 0.7 0.391969
Target:  5'- aCCGCGuugccguucaacaucCGCGCCUUUcccagcgcaAAG-CCGUCGCa -3'
miRNA:   3'- -GGCGCu--------------GCGCGGAAG---------UUCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 49593 0.7 0.399869
Target:  5'- uCCGUGGCugGCGCgUUCu-GcCUGCCGCu -3'
miRNA:   3'- -GGCGCUG--CGCGgAAGuuCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 24670 0.7 0.408765
Target:  5'- -gGCG-CGCGCCUUgCAAcgaCGCCGCc -3'
miRNA:   3'- ggCGCuGCGCGGAA-GUUcagGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 36883 0.7 0.408765
Target:  5'- gCGCGAgCGCGCCaUCA--UCgCGCCGa -3'
miRNA:   3'- gGCGCU-GCGCGGaAGUucAG-GCGGCg -5'
22707 5' -58.1 NC_005091.1 + 14226 0.7 0.382453
Target:  5'- aUCGUGACGgGCacggUCGAG-CCGCCuuGCg -3'
miRNA:   3'- -GGCGCUGCgCGga--AGUUCaGGCGG--CG- -5'
22707 5' -58.1 NC_005091.1 + 43561 0.7 0.382453
Target:  5'- aUCGCGAgaaGCGCCggaCAGGUCUuCUGCa -3'
miRNA:   3'- -GGCGCUg--CGCGGaa-GUUCAGGcGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.