Results 1 - 20 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22707 | 5' | -58.1 | NC_005091.1 | + | 34862 | 1.12 | 0.000437 |
Target: 5'- gCCGCGACGCGCCUUCAAGUCCGCCGCc -3' miRNA: 3'- -GGCGCUGCGCGGAAGUUCAGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 52059 | 0.86 | 0.035352 |
Target: 5'- aCGCGcCGCGCgCUUCGAGauauUCCGCCGCa -3' miRNA: 3'- gGCGCuGCGCG-GAAGUUC----AGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 26568 | 0.79 | 0.099301 |
Target: 5'- uUCGCGACGCGCUgggugagucgUUCgAAGUCCcgGCCGCc -3' miRNA: 3'- -GGCGCUGCGCGG----------AAG-UUCAGG--CGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 36317 | 0.76 | 0.156952 |
Target: 5'- gUCGCGGCGUGCCgacccgcuugUCA--UCCGCCGUc -3' miRNA: 3'- -GGCGCUGCGCGGa---------AGUucAGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 34160 | 0.75 | 0.178976 |
Target: 5'- aCGCGGC-CGCUaUCGAGUCCgagcuGCCGCc -3' miRNA: 3'- gGCGCUGcGCGGaAGUUCAGG-----CGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 20270 | 0.73 | 0.26859 |
Target: 5'- aCGCGuCGcCGCUUUgCGAGUagCCGCCGUg -3' miRNA: 3'- gGCGCuGC-GCGGAA-GUUCA--GGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 25469 | 0.72 | 0.275251 |
Target: 5'- uUCGCgGACGCGUggacCAAGUUCGCCGUc -3' miRNA: 3'- -GGCG-CUGCGCGgaa-GUUCAGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 52793 | 0.72 | 0.288968 |
Target: 5'- aCGCGGCG-GCgaUCAGG-CCGCaCGCg -3' miRNA: 3'- gGCGCUGCgCGgaAGUUCaGGCG-GCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 21864 | 0.72 | 0.303215 |
Target: 5'- aCGaGACGCG-CUUCAGGUCCGagGCg -3' miRNA: 3'- gGCgCUGCGCgGAAGUUCAGGCggCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 44774 | 0.71 | 0.317997 |
Target: 5'- gCCGUGGucguugccuuCGUGCCUUCGGccgccuugCCGCCGCc -3' miRNA: 3'- -GGCGCU----------GCGCGGAAGUUca------GGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 35216 | 0.71 | 0.341174 |
Target: 5'- gCCGCGACGCGUaccaCAAGcugcugaCCGgCCGCu -3' miRNA: 3'- -GGCGCUGCGCGgaa-GUUCa------GGC-GGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 44558 | 0.71 | 0.341174 |
Target: 5'- cCCGCGucuucuucgaGCGCCUUC---UCgGCCGCg -3' miRNA: 3'- -GGCGCug--------CGCGGAAGuucAGgCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 16213 | 0.71 | 0.349167 |
Target: 5'- cCCGcCGuCGCGCCcggaUCAGGgacgaggCCGCCGg -3' miRNA: 3'- -GGC-GCuGCGCGGa---AGUUCa------GGCGGCg -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 45314 | 0.7 | 0.373091 |
Target: 5'- gCCGCGACGCuuGCucaacccgcauauCUUCgAAGUgCCGaCCGCa -3' miRNA: 3'- -GGCGCUGCG--CG-------------GAAG-UUCA-GGC-GGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 52877 | 0.7 | 0.373936 |
Target: 5'- gCCGCGuGCG-GCCUgaucg-CCGCCGCg -3' miRNA: 3'- -GGCGC-UGCgCGGAaguucaGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 45596 | 0.7 | 0.382453 |
Target: 5'- cCCGUGGCGagccaCGUCUUCAAcUUCGCCuGCg -3' miRNA: 3'- -GGCGCUGC-----GCGGAAGUUcAGGCGG-CG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 14226 | 0.7 | 0.382453 |
Target: 5'- aUCGUGACGgGCacggUCGAG-CCGCCuuGCg -3' miRNA: 3'- -GGCGCUGCgCGga--AGUUCaGGCGG--CG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 43561 | 0.7 | 0.382453 |
Target: 5'- aUCGCGAgaaGCGCCggaCAGGUCUuCUGCa -3' miRNA: 3'- -GGCGCUg--CGCGGaa-GUUCAGGcGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 35152 | 0.7 | 0.382453 |
Target: 5'- gUCGCGGCGcCGCCgcgAGGUaCUGCCGg -3' miRNA: 3'- -GGCGCUGC-GCGGaagUUCA-GGCGGCg -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 38072 | 0.7 | 0.391098 |
Target: 5'- gCGCGuuGCGCCUUgCGAGUCaggcucgauaCCGCa -3' miRNA: 3'- gGCGCugCGCGGAA-GUUCAGgc--------GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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