miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22707 5' -58.1 NC_005091.1 + 26371 0.7 0.391098
Target:  5'- cCCGCG-CGCGguCCUgacgggcauUCAggcGGUCUGCUGCg -3'
miRNA:   3'- -GGCGCuGCGC--GGA---------AGU---UCAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 47638 0.7 0.391098
Target:  5'- -aGCGGCGUGCCgUgGAaUCCGgCGCa -3'
miRNA:   3'- ggCGCUGCGCGGaAgUUcAGGCgGCG- -5'
22707 5' -58.1 NC_005091.1 + 52813 0.7 0.391969
Target:  5'- aCCGCGuugccguucaacaucCGCGCCUUUcccagcgcaAAG-CCGUCGCa -3'
miRNA:   3'- -GGCGCu--------------GCGCGGAAG---------UUCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 49593 0.7 0.399869
Target:  5'- uCCGUGGCugGCGCgUUCu-GcCUGCCGCu -3'
miRNA:   3'- -GGCGCUG--CGCGgAAGuuCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 24670 0.7 0.408765
Target:  5'- -gGCG-CGCGCCUUgCAAcgaCGCCGCc -3'
miRNA:   3'- ggCGCuGCGCGGAA-GUUcagGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 36883 0.7 0.408765
Target:  5'- gCGCGAgCGCGCCaUCA--UCgCGCCGa -3'
miRNA:   3'- gGCGCU-GCGCGGaAGUucAG-GCGGCg -5'
22707 5' -58.1 NC_005091.1 + 48715 0.69 0.417784
Target:  5'- aCGCGGCGgGCUgcugCGuguuGGUgUCGCCGCg -3'
miRNA:   3'- gGCGCUGCgCGGaa--GU----UCA-GGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 12169 0.69 0.426004
Target:  5'- aCUGCGGCgggaucaGCGCCUUCAugucGUCCGgCa- -3'
miRNA:   3'- -GGCGCUG-------CGCGGAAGUu---CAGGCgGcg -5'
22707 5' -58.1 NC_005091.1 + 11786 0.69 0.426923
Target:  5'- aCC-UGACGUGCCUUCAAcaCCugaaagagaGCCGCg -3'
miRNA:   3'- -GGcGCUGCGCGGAAGUUcaGG---------CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 22145 0.69 0.426923
Target:  5'- gCGUGACGCGCCcgCGcAGUgCGUacaGCa -3'
miRNA:   3'- gGCGCUGCGCGGaaGU-UCAgGCGg--CG- -5'
22707 5' -58.1 NC_005091.1 + 24537 0.69 0.436179
Target:  5'- uCCGCGAUGuCGUa--CAAG-CCGCCGg -3'
miRNA:   3'- -GGCGCUGC-GCGgaaGUUCaGGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 39976 0.69 0.436179
Target:  5'- cCUGuUGGCGCaGCCggauGGUCgGCCGCg -3'
miRNA:   3'- -GGC-GCUGCG-CGGaaguUCAGgCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 25913 0.69 0.44555
Target:  5'- cUCGC--CGCGUCguacggCAAGUUCGCCGUg -3'
miRNA:   3'- -GGCGcuGCGCGGaa----GUUCAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 34437 0.69 0.455033
Target:  5'- aCGCGGCGUGCaguacgaCAAGcgcggCCGgCCGCa -3'
miRNA:   3'- gGCGCUGCGCGgaa----GUUCa----GGC-GGCG- -5'
22707 5' -58.1 NC_005091.1 + 54938 0.69 0.455033
Target:  5'- gCCGCaACGCGCUcgcCAAG--CGCCGCg -3'
miRNA:   3'- -GGCGcUGCGCGGaa-GUUCagGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 19527 0.69 0.464623
Target:  5'- uUCGCGGgguccgguugcUGCGCUUUCGGGccgagcgCCGCCGa -3'
miRNA:   3'- -GGCGCU-----------GCGCGGAAGUUCa------GGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 36100 0.69 0.464623
Target:  5'- uCgGCG-CGCGCCUUCAGcGUCU-CCGg -3'
miRNA:   3'- -GgCGCuGCGCGGAAGUU-CAGGcGGCg -5'
22707 5' -58.1 NC_005091.1 + 26037 0.68 0.474318
Target:  5'- gCCGUGGCgaGCGCgaUC-AGcUCGCCGCg -3'
miRNA:   3'- -GGCGCUG--CGCGgaAGuUCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 11307 0.68 0.474318
Target:  5'- uUCGCGGCuucaaCGCCUugUUGAGcggCUGCCGCg -3'
miRNA:   3'- -GGCGCUGc----GCGGA--AGUUCa--GGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 22441 0.68 0.484113
Target:  5'- gCGCGAUcCGCCuUUCGGGUCauCUGCg -3'
miRNA:   3'- gGCGCUGcGCGG-AAGUUCAGgcGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.