Results 41 - 60 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22707 | 5' | -58.1 | NC_005091.1 | + | 22441 | 0.68 | 0.484113 |
Target: 5'- gCGCGAUcCGCCuUUCGGGUCauCUGCg -3' miRNA: 3'- gGCGCUGcGCGG-AAGUUCAGgcGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 26744 | 0.68 | 0.494004 |
Target: 5'- gCGUGAUGCGCUcaacgcCGGG-CCGCCGa -3' miRNA: 3'- gGCGCUGCGCGGaa----GUUCaGGCGGCg -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 4217 | 0.68 | 0.494004 |
Target: 5'- cCCgGCGGCGCGCCcgUCAccg-UGCCGUa -3' miRNA: 3'- -GG-CGCUGCGCGGa-AGUucagGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 53549 | 0.68 | 0.494004 |
Target: 5'- aUGC-ACGCGCCUUCuaccUCGUCGCa -3' miRNA: 3'- gGCGcUGCGCGGAAGuucaGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 31707 | 0.68 | 0.494004 |
Target: 5'- gCCGCGcCGgcCGCCUUCGGcUgCGCCGa -3' miRNA: 3'- -GGCGCuGC--GCGGAAGUUcAgGCGGCg -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 13237 | 0.68 | 0.503986 |
Target: 5'- gCCGCGAucCGCGCaa-CGAacuuGUUgGCCGCa -3' miRNA: 3'- -GGCGCU--GCGCGgaaGUU----CAGgCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 49553 | 0.68 | 0.503986 |
Target: 5'- gCCGCGucggGgGCGUCUUCGua-CCGCCuGCg -3' miRNA: 3'- -GGCGC----UgCGCGGAAGUucaGGCGG-CG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 34773 | 0.68 | 0.503986 |
Target: 5'- gCCGCG-CGCGUCggCGA-UCCGCUucaGCg -3' miRNA: 3'- -GGCGCuGCGCGGaaGUUcAGGCGG---CG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 51502 | 0.68 | 0.514055 |
Target: 5'- gCUGCG-CGUGCagucgcgaUUCAAG-CUGCCGUa -3' miRNA: 3'- -GGCGCuGCGCGg-------AAGUUCaGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 18188 | 0.67 | 0.533404 |
Target: 5'- aCCGCuucaacGGCGUGCCguucgacUUCAGGUCgCGCauCGCc -3' miRNA: 3'- -GGCG------CUGCGCGG-------AAGUUCAG-GCG--GCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 48620 | 0.67 | 0.534429 |
Target: 5'- -aGUGACGCGgCgaCAccaacacgcagcAGcCCGCCGCg -3' miRNA: 3'- ggCGCUGCGCgGaaGU------------UCaGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 25161 | 0.67 | 0.534429 |
Target: 5'- uCCGUGGC-CGCCgaucGGUUgaaCGCCGCg -3' miRNA: 3'- -GGCGCUGcGCGGaaguUCAG---GCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 34450 | 0.67 | 0.534429 |
Target: 5'- gUCGCGuACG-GCC----GGUUCGCCGCg -3' miRNA: 3'- -GGCGC-UGCgCGGaaguUCAGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 29500 | 0.67 | 0.534429 |
Target: 5'- aCGCuGGCGCGCgccgaucacagCUUCGAGgUCGuuGCg -3' miRNA: 3'- gGCG-CUGCGCG-----------GAAGUUCaGGCggCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 46460 | 0.67 | 0.544725 |
Target: 5'- -gGCGACGC-UCgaCAAG-CCGUCGCg -3' miRNA: 3'- ggCGCUGCGcGGaaGUUCaGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 32885 | 0.67 | 0.544725 |
Target: 5'- gCCGCcua-CGCCaUCGcuUCCGCCGCa -3' miRNA: 3'- -GGCGcugcGCGGaAGUucAGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 37287 | 0.67 | 0.544725 |
Target: 5'- gCCGcCGGaaCGCCUgaccguaucgCAGG-CCGCCGCc -3' miRNA: 3'- -GGC-GCUgcGCGGAa---------GUUCaGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 28807 | 0.67 | 0.555083 |
Target: 5'- gCCGaGGCGCaCCUgCAcGUCCGCCa- -3' miRNA: 3'- -GGCgCUGCGcGGAaGUuCAGGCGGcg -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 41988 | 0.67 | 0.555083 |
Target: 5'- gCCGUGGCaCG-CUUCAGGUgCGCagaaGCa -3' miRNA: 3'- -GGCGCUGcGCgGAAGUUCAgGCGg---CG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 46677 | 0.67 | 0.555083 |
Target: 5'- aCGCGAaGCGCCUUUAA-UUCGgCGUu -3' miRNA: 3'- gGCGCUgCGCGGAAGUUcAGGCgGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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