miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22707 5' -58.1 NC_005091.1 + 46677 0.67 0.555083
Target:  5'- aCGCGAaGCGCCUUUAA-UUCGgCGUu -3'
miRNA:   3'- gGCGCUgCGCGGAAGUUcAGGCgGCG- -5'
22707 5' -58.1 NC_005091.1 + 26470 0.67 0.565498
Target:  5'- gCCGCagcaGAC-CGCCUgaaugcccgUCAGGaCCGCgCGCg -3'
miRNA:   3'- -GGCG----CUGcGCGGA---------AGUUCaGGCG-GCG- -5'
22707 5' -58.1 NC_005091.1 + 13338 0.67 0.565498
Target:  5'- gCCGUuugucGAUGCgGCCaaCAAGUUCGuuGCg -3'
miRNA:   3'- -GGCG-----CUGCG-CGGaaGUUCAGGCggCG- -5'
22707 5' -58.1 NC_005091.1 + 24776 0.67 0.574915
Target:  5'- uCUGCGACGUuaucgagGCCg--AGGaauUCCGCCGUg -3'
miRNA:   3'- -GGCGCUGCG-------CGGaagUUC---AGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 41738 0.67 0.574915
Target:  5'- cCCGCuugauGACGUucggGUCUUCGAGcgccucgcgaacuUCCGCCGg -3'
miRNA:   3'- -GGCG-----CUGCG----CGGAAGUUC-------------AGGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 33716 0.67 0.575963
Target:  5'- uCgGCGcacaucuucuuGCGC-CCUUCGAGgaagCGCCGCg -3'
miRNA:   3'- -GgCGC-----------UGCGcGGAAGUUCag--GCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 13567 0.67 0.575963
Target:  5'- uCgGCGGCGCaccgucGCCaUUCGAGUaUCGCgGCc -3'
miRNA:   3'- -GgCGCUGCG------CGG-AAGUUCA-GGCGgCG- -5'
22707 5' -58.1 NC_005091.1 + 52127 0.67 0.575963
Target:  5'- gCGCGGCGCGUaucUCGcgauugaggaAGUCaCGCuCGCc -3'
miRNA:   3'- gGCGCUGCGCGga-AGU----------UCAG-GCG-GCG- -5'
22707 5' -58.1 NC_005091.1 + 33433 0.66 0.586472
Target:  5'- cUCGCGAgCGCGCUgcgcgaagcucuUUCGgaAGucUCCGCCGa -3'
miRNA:   3'- -GGCGCU-GCGCGG------------AAGU--UC--AGGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 52760 0.66 0.586472
Target:  5'- gCCgGCGuGCGCGCCcgUCuGGUCgUGUCGUa -3'
miRNA:   3'- -GG-CGC-UGCGCGGa-AGuUCAG-GCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 37319 0.66 0.590685
Target:  5'- cCCGCGcuguCGCGaUCUUgAAGUCCucguacuccguccucGCCGUc -3'
miRNA:   3'- -GGCGCu---GCGC-GGAAgUUCAGG---------------CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 20492 0.66 0.595959
Target:  5'- gUGCGugGgaacagagaugucCGCgUUaGGGUCUGCCGCg -3'
miRNA:   3'- gGCGCugC-------------GCGgAAgUUCAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 47424 0.66 0.597015
Target:  5'- -aGCGgcaGCGCGUCUUUgAAGUUCGUCaGCa -3'
miRNA:   3'- ggCGC---UGCGCGGAAG-UUCAGGCGG-CG- -5'
22707 5' -58.1 NC_005091.1 + 16264 0.66 0.597015
Target:  5'- cUCGCGAcgaaCGCGCCgagCAcGUUCcacgucgcuugGCCGCg -3'
miRNA:   3'- -GGCGCU----GCGCGGaa-GUuCAGG-----------CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 51985 0.66 0.60547
Target:  5'- uUCGUGcCGCGCCUgauggguuacgaCGAG-CCGUCGUu -3'
miRNA:   3'- -GGCGCuGCGCGGAa-----------GUUCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 32423 0.66 0.607587
Target:  5'- gCCGcCGAacgcCGUGCUgcuaUCAAGgCCGaCCGCg -3'
miRNA:   3'- -GGC-GCU----GCGCGGa---AGUUCaGGC-GGCG- -5'
22707 5' -58.1 NC_005091.1 + 54083 0.66 0.607587
Target:  5'- cUCGauuCGCGCCUugUCGcguucGGUCgCGCCGUg -3'
miRNA:   3'- -GGCgcuGCGCGGA--AGU-----UCAG-GCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 1294 0.66 0.617118
Target:  5'- uUCGCGACGUGCgg-CAAGcagucgaUCaCGCCGg -3'
miRNA:   3'- -GGCGCUGCGCGgaaGUUC-------AG-GCGGCg -5'
22707 5' -58.1 NC_005091.1 + 14430 0.66 0.62878
Target:  5'- aCGCGACGC-CUaUCGA-UUCGCCGg -3'
miRNA:   3'- gGCGCUGCGcGGaAGUUcAGGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 40508 0.66 0.62878
Target:  5'- aCCGCGAgGCGUacccCGAGgucCCGCaGCu -3'
miRNA:   3'- -GGCGCUgCGCGgaa-GUUCa--GGCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.