Results 61 - 80 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
22707 | 5' | -58.1 | NC_005091.1 | + | 24537 | 0.69 | 0.436179 |
Target: 5'- uCCGCGAUGuCGUa--CAAG-CCGCCGg -3' miRNA: 3'- -GGCGCUGC-GCGgaaGUUCaGGCGGCg -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 39976 | 0.69 | 0.436179 |
Target: 5'- cCUGuUGGCGCaGCCggauGGUCgGCCGCg -3' miRNA: 3'- -GGC-GCUGCG-CGGaaguUCAGgCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 11786 | 0.69 | 0.426923 |
Target: 5'- aCC-UGACGUGCCUUCAAcaCCugaaagagaGCCGCg -3' miRNA: 3'- -GGcGCUGCGCGGAAGUUcaGG---------CGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 22145 | 0.69 | 0.426923 |
Target: 5'- gCGUGACGCGCCcgCGcAGUgCGUacaGCa -3' miRNA: 3'- gGCGCUGCGCGGaaGU-UCAgGCGg--CG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 12169 | 0.69 | 0.426004 |
Target: 5'- aCUGCGGCgggaucaGCGCCUUCAugucGUCCGgCa- -3' miRNA: 3'- -GGCGCUG-------CGCGGAAGUu---CAGGCgGcg -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 48715 | 0.69 | 0.417784 |
Target: 5'- aCGCGGCGgGCUgcugCGuguuGGUgUCGCCGCg -3' miRNA: 3'- gGCGCUGCgCGGaa--GU----UCA-GGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 36883 | 0.7 | 0.408765 |
Target: 5'- gCGCGAgCGCGCCaUCA--UCgCGCCGa -3' miRNA: 3'- gGCGCU-GCGCGGaAGUucAG-GCGGCg -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 24670 | 0.7 | 0.408765 |
Target: 5'- -gGCG-CGCGCCUUgCAAcgaCGCCGCc -3' miRNA: 3'- ggCGCuGCGCGGAA-GUUcagGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 49593 | 0.7 | 0.399869 |
Target: 5'- uCCGUGGCugGCGCgUUCu-GcCUGCCGCu -3' miRNA: 3'- -GGCGCUG--CGCGgAAGuuCaGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 52813 | 0.7 | 0.391969 |
Target: 5'- aCCGCGuugccguucaacaucCGCGCCUUUcccagcgcaAAG-CCGUCGCa -3' miRNA: 3'- -GGCGCu--------------GCGCGGAAG---------UUCaGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 47638 | 0.7 | 0.391098 |
Target: 5'- -aGCGGCGUGCCgUgGAaUCCGgCGCa -3' miRNA: 3'- ggCGCUGCGCGGaAgUUcAGGCgGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 26371 | 0.7 | 0.391098 |
Target: 5'- cCCGCG-CGCGguCCUgacgggcauUCAggcGGUCUGCUGCg -3' miRNA: 3'- -GGCGCuGCGC--GGA---------AGU---UCAGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 38072 | 0.7 | 0.391098 |
Target: 5'- gCGCGuuGCGCCUUgCGAGUCaggcucgauaCCGCa -3' miRNA: 3'- gGCGCugCGCGGAA-GUUCAGgc--------GGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 14226 | 0.7 | 0.382453 |
Target: 5'- aUCGUGACGgGCacggUCGAG-CCGCCuuGCg -3' miRNA: 3'- -GGCGCUGCgCGga--AGUUCaGGCGG--CG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 43561 | 0.7 | 0.382453 |
Target: 5'- aUCGCGAgaaGCGCCggaCAGGUCUuCUGCa -3' miRNA: 3'- -GGCGCUg--CGCGGaa-GUUCAGGcGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 45596 | 0.7 | 0.382453 |
Target: 5'- cCCGUGGCGagccaCGUCUUCAAcUUCGCCuGCg -3' miRNA: 3'- -GGCGCUGC-----GCGGAAGUUcAGGCGG-CG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 35152 | 0.7 | 0.382453 |
Target: 5'- gUCGCGGCGcCGCCgcgAGGUaCUGCCGg -3' miRNA: 3'- -GGCGCUGC-GCGGaagUUCA-GGCGGCg -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 52877 | 0.7 | 0.373936 |
Target: 5'- gCCGCGuGCG-GCCUgaucg-CCGCCGCg -3' miRNA: 3'- -GGCGC-UGCgCGGAaguucaGGCGGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 45314 | 0.7 | 0.373091 |
Target: 5'- gCCGCGACGCuuGCucaacccgcauauCUUCgAAGUgCCGaCCGCa -3' miRNA: 3'- -GGCGCUGCG--CG-------------GAAG-UUCA-GGC-GGCG- -5' |
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22707 | 5' | -58.1 | NC_005091.1 | + | 16213 | 0.71 | 0.349167 |
Target: 5'- cCCGcCGuCGCGCCcggaUCAGGgacgaggCCGCCGg -3' miRNA: 3'- -GGC-GCuGCGCGGa---AGUUCa------GGCGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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