miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22707 5' -58.1 NC_005091.1 + 494 0.66 0.639385
Target:  5'- gUCGCGugcgugagaaccGCGCGCUcUCc---CCGCCGCu -3'
miRNA:   3'- -GGCGC------------UGCGCGGaAGuucaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 1294 0.66 0.617118
Target:  5'- uUCGCGACGUGCgg-CAAGcagucgaUCaCGCCGg -3'
miRNA:   3'- -GGCGCUGCGCGgaaGUUC-------AG-GCGGCg -5'
22707 5' -58.1 NC_005091.1 + 2311 0.67 0.555083
Target:  5'- aUCGCGACGaCGCCga-AGGU-CGCCu- -3'
miRNA:   3'- -GGCGCUGC-GCGGaagUUCAgGCGGcg -5'
22707 5' -58.1 NC_005091.1 + 4217 0.68 0.494004
Target:  5'- cCCgGCGGCGCGCCcgUCAccg-UGCCGUa -3'
miRNA:   3'- -GG-CGCUGCGCGGa-AGUucagGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 10867 0.66 0.62878
Target:  5'- gCCGCGAucguuCGCGCacUCug--CUGCCGCu -3'
miRNA:   3'- -GGCGCU-----GCGCGgaAGuucaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 11307 0.68 0.474318
Target:  5'- uUCGCGGCuucaaCGCCUugUUGAGcggCUGCCGCg -3'
miRNA:   3'- -GGCGCUGc----GCGGA--AGUUCa--GGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 11786 0.69 0.426923
Target:  5'- aCC-UGACGUGCCUUCAAcaCCugaaagagaGCCGCg -3'
miRNA:   3'- -GGcGCUGCGCGGAAGUUcaGG---------CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 12169 0.69 0.426004
Target:  5'- aCUGCGGCgggaucaGCGCCUUCAugucGUCCGgCa- -3'
miRNA:   3'- -GGCGCUG-------CGCGGAAGUu---CAGGCgGcg -5'
22707 5' -58.1 NC_005091.1 + 13237 0.68 0.503986
Target:  5'- gCCGCGAucCGCGCaa-CGAacuuGUUgGCCGCa -3'
miRNA:   3'- -GGCGCU--GCGCGgaaGUU----CAGgCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 13338 0.67 0.565498
Target:  5'- gCCGUuugucGAUGCgGCCaaCAAGUUCGuuGCg -3'
miRNA:   3'- -GGCG-----CUGCG-CGGaaGUUCAGGCggCG- -5'
22707 5' -58.1 NC_005091.1 + 13567 0.67 0.575963
Target:  5'- uCgGCGGCGCaccgucGCCaUUCGAGUaUCGCgGCc -3'
miRNA:   3'- -GgCGCUGCG------CGG-AAGUUCA-GGCGgCG- -5'
22707 5' -58.1 NC_005091.1 + 13997 0.66 0.633022
Target:  5'- aCCGCccguuccggagaucGCGCGCCa-CAuaUCCGCCGUg -3'
miRNA:   3'- -GGCGc-------------UGCGCGGaaGUucAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 14226 0.7 0.382453
Target:  5'- aUCGUGACGgGCacggUCGAG-CCGCCuuGCg -3'
miRNA:   3'- -GGCGCUGCgCGga--AGUUCaGGCGG--CG- -5'
22707 5' -58.1 NC_005091.1 + 14430 0.66 0.62878
Target:  5'- aCGCGACGC-CUaUCGA-UUCGCCGg -3'
miRNA:   3'- gGCGCUGCGcGGaAGUUcAGGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 15656 0.66 0.639385
Target:  5'- aCCaGUGGCcCGCUgcgAAGUCCGuuGCg -3'
miRNA:   3'- -GG-CGCUGcGCGGaagUUCAGGCggCG- -5'
22707 5' -58.1 NC_005091.1 + 16213 0.71 0.349167
Target:  5'- cCCGcCGuCGCGCCcggaUCAGGgacgaggCCGCCGg -3'
miRNA:   3'- -GGC-GCuGCGCGGa---AGUUCa------GGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 16264 0.66 0.597015
Target:  5'- cUCGCGAcgaaCGCGCCgagCAcGUUCcacgucgcuugGCCGCg -3'
miRNA:   3'- -GGCGCU----GCGCGGaa-GUuCAGG-----------CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 17904 0.66 0.639385
Target:  5'- gCCGUGGCGCGCaagccgaauauCUUCucG-CUGUCGUa -3'
miRNA:   3'- -GGCGCUGCGCG-----------GAAGuuCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 18188 0.67 0.533404
Target:  5'- aCCGCuucaacGGCGUGCCguucgacUUCAGGUCgCGCauCGCc -3'
miRNA:   3'- -GGCG------CUGCGCGG-------AAGUUCAG-GCG--GCG- -5'
22707 5' -58.1 NC_005091.1 + 19527 0.69 0.464623
Target:  5'- uUCGCGGgguccgguugcUGCGCUUUCGGGccgagcgCCGCCGa -3'
miRNA:   3'- -GGCGCU-----------GCGCGGAAGUUCa------GGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.