miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22707 5' -58.1 NC_005091.1 + 28807 0.67 0.555083
Target:  5'- gCCGaGGCGCaCCUgCAcGUCCGCCa- -3'
miRNA:   3'- -GGCgCUGCGcGGAaGUuCAGGCGGcg -5'
22707 5' -58.1 NC_005091.1 + 29500 0.67 0.534429
Target:  5'- aCGCuGGCGCGCgccgaucacagCUUCGAGgUCGuuGCg -3'
miRNA:   3'- gGCG-CUGCGCG-----------GAAGUUCaGGCggCG- -5'
22707 5' -58.1 NC_005091.1 + 31707 0.68 0.494004
Target:  5'- gCCGCGcCGgcCGCCUUCGGcUgCGCCGa -3'
miRNA:   3'- -GGCGCuGC--GCGGAAGUUcAgGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 32423 0.66 0.607587
Target:  5'- gCCGcCGAacgcCGUGCUgcuaUCAAGgCCGaCCGCg -3'
miRNA:   3'- -GGC-GCU----GCGCGGa---AGUUCaGGC-GGCG- -5'
22707 5' -58.1 NC_005091.1 + 32885 0.67 0.544725
Target:  5'- gCCGCcua-CGCCaUCGcuUCCGCCGCa -3'
miRNA:   3'- -GGCGcugcGCGGaAGUucAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 33433 0.66 0.586472
Target:  5'- cUCGCGAgCGCGCUgcgcgaagcucuUUCGgaAGucUCCGCCGa -3'
miRNA:   3'- -GGCGCU-GCGCGG------------AAGU--UC--AGGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 33716 0.67 0.575963
Target:  5'- uCgGCGcacaucuucuuGCGC-CCUUCGAGgaagCGCCGCg -3'
miRNA:   3'- -GgCGC-----------UGCGcGGAAGUUCag--GCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 34160 0.75 0.178976
Target:  5'- aCGCGGC-CGCUaUCGAGUCCgagcuGCCGCc -3'
miRNA:   3'- gGCGCUGcGCGGaAGUUCAGG-----CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 34437 0.69 0.455033
Target:  5'- aCGCGGCGUGCaguacgaCAAGcgcggCCGgCCGCa -3'
miRNA:   3'- gGCGCUGCGCGgaa----GUUCa----GGC-GGCG- -5'
22707 5' -58.1 NC_005091.1 + 34450 0.67 0.534429
Target:  5'- gUCGCGuACG-GCC----GGUUCGCCGCg -3'
miRNA:   3'- -GGCGC-UGCgCGGaaguUCAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 34773 0.68 0.503986
Target:  5'- gCCGCG-CGCGUCggCGA-UCCGCUucaGCg -3'
miRNA:   3'- -GGCGCuGCGCGGaaGUUcAGGCGG---CG- -5'
22707 5' -58.1 NC_005091.1 + 34862 1.12 0.000437
Target:  5'- gCCGCGACGCGCCUUCAAGUCCGCCGCc -3'
miRNA:   3'- -GGCGCUGCGCGGAAGUUCAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 35152 0.7 0.382453
Target:  5'- gUCGCGGCGcCGCCgcgAGGUaCUGCCGg -3'
miRNA:   3'- -GGCGCUGC-GCGGaagUUCA-GGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 35216 0.71 0.341174
Target:  5'- gCCGCGACGCGUaccaCAAGcugcugaCCGgCCGCu -3'
miRNA:   3'- -GGCGCUGCGCGgaa-GUUCa------GGC-GGCG- -5'
22707 5' -58.1 NC_005091.1 + 36100 0.69 0.464623
Target:  5'- uCgGCG-CGCGCCUUCAGcGUCU-CCGg -3'
miRNA:   3'- -GgCGCuGCGCGGAAGUU-CAGGcGGCg -5'
22707 5' -58.1 NC_005091.1 + 36317 0.76 0.156952
Target:  5'- gUCGCGGCGUGCCgacccgcuugUCA--UCCGCCGUc -3'
miRNA:   3'- -GGCGCUGCGCGGa---------AGUucAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 36883 0.7 0.408765
Target:  5'- gCGCGAgCGCGCCaUCA--UCgCGCCGa -3'
miRNA:   3'- gGCGCU-GCGCGGaAGUucAG-GCGGCg -5'
22707 5' -58.1 NC_005091.1 + 37287 0.67 0.544725
Target:  5'- gCCGcCGGaaCGCCUgaccguaucgCAGG-CCGCCGCc -3'
miRNA:   3'- -GGC-GCUgcGCGGAa---------GUUCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 37319 0.66 0.590685
Target:  5'- cCCGCGcuguCGCGaUCUUgAAGUCCucguacuccguccucGCCGUc -3'
miRNA:   3'- -GGCGCu---GCGC-GGAAgUUCAGG---------------CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 38072 0.7 0.391098
Target:  5'- gCGCGuuGCGCCUUgCGAGUCaggcucgauaCCGCa -3'
miRNA:   3'- gGCGCugCGCGGAA-GUUCAGgc--------GGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.