miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22707 5' -58.1 NC_005091.1 + 39976 0.69 0.436179
Target:  5'- cCUGuUGGCGCaGCCggauGGUCgGCCGCg -3'
miRNA:   3'- -GGC-GCUGCG-CGGaaguUCAGgCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 40508 0.66 0.62878
Target:  5'- aCCGCGAgGCGUacccCGAGgucCCGCaGCu -3'
miRNA:   3'- -GGCGCUgCGCGgaa-GUUCa--GGCGgCG- -5'
22707 5' -58.1 NC_005091.1 + 41025 0.66 0.62878
Target:  5'- gCGgGACGCgGUgUUCAGGUUCacaaccucgGCCGUa -3'
miRNA:   3'- gGCgCUGCG-CGgAAGUUCAGG---------CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 41738 0.67 0.574915
Target:  5'- cCCGCuugauGACGUucggGUCUUCGAGcgccucgcgaacuUCCGCCGg -3'
miRNA:   3'- -GGCG-----CUGCG----CGGAAGUUC-------------AGGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 41988 0.67 0.555083
Target:  5'- gCCGUGGCaCG-CUUCAGGUgCGCagaaGCa -3'
miRNA:   3'- -GGCGCUGcGCgGAAGUUCAgGCGg---CG- -5'
22707 5' -58.1 NC_005091.1 + 43178 0.66 0.639385
Target:  5'- gUCGCGAaaGCGCCgggCAAGcgaccuuggcUCCuGUCGCa -3'
miRNA:   3'- -GGCGCUg-CGCGGaa-GUUC----------AGG-CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 43561 0.7 0.382453
Target:  5'- aUCGCGAgaaGCGCCggaCAGGUCUuCUGCa -3'
miRNA:   3'- -GGCGCUg--CGCGGaa-GUUCAGGcGGCG- -5'
22707 5' -58.1 NC_005091.1 + 44558 0.71 0.341174
Target:  5'- cCCGCGucuucuucgaGCGCCUUC---UCgGCCGCg -3'
miRNA:   3'- -GGCGCug--------CGCGGAAGuucAGgCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 44774 0.71 0.317997
Target:  5'- gCCGUGGucguugccuuCGUGCCUUCGGccgccuugCCGCCGCc -3'
miRNA:   3'- -GGCGCU----------GCGCGGAAGUUca------GGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 45314 0.7 0.373091
Target:  5'- gCCGCGACGCuuGCucaacccgcauauCUUCgAAGUgCCGaCCGCa -3'
miRNA:   3'- -GGCGCUGCG--CG-------------GAAG-UUCA-GGC-GGCG- -5'
22707 5' -58.1 NC_005091.1 + 45596 0.7 0.382453
Target:  5'- cCCGUGGCGagccaCGUCUUCAAcUUCGCCuGCg -3'
miRNA:   3'- -GGCGCUGC-----GCGGAAGUUcAGGCGG-CG- -5'
22707 5' -58.1 NC_005091.1 + 46460 0.67 0.544725
Target:  5'- -gGCGACGC-UCgaCAAG-CCGUCGCg -3'
miRNA:   3'- ggCGCUGCGcGGaaGUUCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 46677 0.67 0.555083
Target:  5'- aCGCGAaGCGCCUUUAA-UUCGgCGUu -3'
miRNA:   3'- gGCGCUgCGCGGAAGUUcAGGCgGCG- -5'
22707 5' -58.1 NC_005091.1 + 47424 0.66 0.597015
Target:  5'- -aGCGgcaGCGCGUCUUUgAAGUUCGUCaGCa -3'
miRNA:   3'- ggCGC---UGCGCGGAAG-UUCAGGCGG-CG- -5'
22707 5' -58.1 NC_005091.1 + 47638 0.7 0.391098
Target:  5'- -aGCGGCGUGCCgUgGAaUCCGgCGCa -3'
miRNA:   3'- ggCGCUGCGCGGaAgUUcAGGCgGCG- -5'
22707 5' -58.1 NC_005091.1 + 48620 0.67 0.534429
Target:  5'- -aGUGACGCGgCgaCAccaacacgcagcAGcCCGCCGCg -3'
miRNA:   3'- ggCGCUGCGCgGaaGU------------UCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 48715 0.69 0.417784
Target:  5'- aCGCGGCGgGCUgcugCGuguuGGUgUCGCCGCg -3'
miRNA:   3'- gGCGCUGCgCGGaa--GU----UCA-GGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 49553 0.68 0.503986
Target:  5'- gCCGCGucggGgGCGUCUUCGua-CCGCCuGCg -3'
miRNA:   3'- -GGCGC----UgCGCGGAAGUucaGGCGG-CG- -5'
22707 5' -58.1 NC_005091.1 + 49593 0.7 0.399869
Target:  5'- uCCGUGGCugGCGCgUUCu-GcCUGCCGCu -3'
miRNA:   3'- -GGCGCUG--CGCGgAAGuuCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 51502 0.68 0.514055
Target:  5'- gCUGCG-CGUGCagucgcgaUUCAAG-CUGCCGUa -3'
miRNA:   3'- -GGCGCuGCGCGg-------AAGUUCaGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.