miRNA display CGI


Results 81 - 92 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22707 5' -58.1 NC_005091.1 + 51985 0.66 0.60547
Target:  5'- uUCGUGcCGCGCCUgauggguuacgaCGAG-CCGUCGUu -3'
miRNA:   3'- -GGCGCuGCGCGGAa-----------GUUCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 52059 0.86 0.035352
Target:  5'- aCGCGcCGCGCgCUUCGAGauauUCCGCCGCa -3'
miRNA:   3'- gGCGCuGCGCG-GAAGUUC----AGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 52127 0.67 0.575963
Target:  5'- gCGCGGCGCGUaucUCGcgauugaggaAGUCaCGCuCGCc -3'
miRNA:   3'- gGCGCUGCGCGga-AGU----------UCAG-GCG-GCG- -5'
22707 5' -58.1 NC_005091.1 + 52760 0.66 0.586472
Target:  5'- gCCgGCGuGCGCGCCcgUCuGGUCgUGUCGUa -3'
miRNA:   3'- -GG-CGC-UGCGCGGa-AGuUCAG-GCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 52793 0.72 0.288968
Target:  5'- aCGCGGCG-GCgaUCAGG-CCGCaCGCg -3'
miRNA:   3'- gGCGCUGCgCGgaAGUUCaGGCG-GCG- -5'
22707 5' -58.1 NC_005091.1 + 52813 0.7 0.391969
Target:  5'- aCCGCGuugccguucaacaucCGCGCCUUUcccagcgcaAAG-CCGUCGCa -3'
miRNA:   3'- -GGCGCu--------------GCGCGGAAG---------UUCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 52877 0.7 0.373936
Target:  5'- gCCGCGuGCG-GCCUgaucg-CCGCCGCg -3'
miRNA:   3'- -GGCGC-UGCgCGGAaguucaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 53175 0.66 0.639385
Target:  5'- gCGCgGGCGCgaGCCUUCcGGugcaUCCGCC-Ca -3'
miRNA:   3'- gGCG-CUGCG--CGGAAGuUC----AGGCGGcG- -5'
22707 5' -58.1 NC_005091.1 + 53549 0.68 0.494004
Target:  5'- aUGC-ACGCGCCUUCuaccUCGUCGCa -3'
miRNA:   3'- gGCGcUGCGCGGAAGuucaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 54083 0.66 0.607587
Target:  5'- cUCGauuCGCGCCUugUCGcguucGGUCgCGCCGUg -3'
miRNA:   3'- -GGCgcuGCGCGGA--AGU-----UCAG-GCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 54938 0.69 0.455033
Target:  5'- gCCGCaACGCGCUcgcCAAG--CGCCGCg -3'
miRNA:   3'- -GGCGcUGCGCGGaa-GUUCagGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 57888 0.66 0.639385
Target:  5'- gUCGCGugcgugagaaccGCGCGCUcUCc---CCGCCGCu -3'
miRNA:   3'- -GGCGC------------UGCGCGGaAGuucaGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.