miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22707 5' -58.1 NC_005091.1 + 46460 0.67 0.544725
Target:  5'- -gGCGACGC-UCgaCAAG-CCGUCGCg -3'
miRNA:   3'- ggCGCUGCGcGGaaGUUCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 45596 0.7 0.382453
Target:  5'- cCCGUGGCGagccaCGUCUUCAAcUUCGCCuGCg -3'
miRNA:   3'- -GGCGCUGC-----GCGGAAGUUcAGGCGG-CG- -5'
22707 5' -58.1 NC_005091.1 + 45314 0.7 0.373091
Target:  5'- gCCGCGACGCuuGCucaacccgcauauCUUCgAAGUgCCGaCCGCa -3'
miRNA:   3'- -GGCGCUGCG--CG-------------GAAG-UUCA-GGC-GGCG- -5'
22707 5' -58.1 NC_005091.1 + 44774 0.71 0.317997
Target:  5'- gCCGUGGucguugccuuCGUGCCUUCGGccgccuugCCGCCGCc -3'
miRNA:   3'- -GGCGCU----------GCGCGGAAGUUca------GGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 44558 0.71 0.341174
Target:  5'- cCCGCGucuucuucgaGCGCCUUC---UCgGCCGCg -3'
miRNA:   3'- -GGCGCug--------CGCGGAAGuucAGgCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 43561 0.7 0.382453
Target:  5'- aUCGCGAgaaGCGCCggaCAGGUCUuCUGCa -3'
miRNA:   3'- -GGCGCUg--CGCGGaa-GUUCAGGcGGCG- -5'
22707 5' -58.1 NC_005091.1 + 43178 0.66 0.639385
Target:  5'- gUCGCGAaaGCGCCgggCAAGcgaccuuggcUCCuGUCGCa -3'
miRNA:   3'- -GGCGCUg-CGCGGaa-GUUC----------AGG-CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 41988 0.67 0.555083
Target:  5'- gCCGUGGCaCG-CUUCAGGUgCGCagaaGCa -3'
miRNA:   3'- -GGCGCUGcGCgGAAGUUCAgGCGg---CG- -5'
22707 5' -58.1 NC_005091.1 + 41738 0.67 0.574915
Target:  5'- cCCGCuugauGACGUucggGUCUUCGAGcgccucgcgaacuUCCGCCGg -3'
miRNA:   3'- -GGCG-----CUGCG----CGGAAGUUC-------------AGGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 41025 0.66 0.62878
Target:  5'- gCGgGACGCgGUgUUCAGGUUCacaaccucgGCCGUa -3'
miRNA:   3'- gGCgCUGCG-CGgAAGUUCAGG---------CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 40508 0.66 0.62878
Target:  5'- aCCGCGAgGCGUacccCGAGgucCCGCaGCu -3'
miRNA:   3'- -GGCGCUgCGCGgaa-GUUCa--GGCGgCG- -5'
22707 5' -58.1 NC_005091.1 + 39976 0.69 0.436179
Target:  5'- cCUGuUGGCGCaGCCggauGGUCgGCCGCg -3'
miRNA:   3'- -GGC-GCUGCG-CGGaaguUCAGgCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 38072 0.7 0.391098
Target:  5'- gCGCGuuGCGCCUUgCGAGUCaggcucgauaCCGCa -3'
miRNA:   3'- gGCGCugCGCGGAA-GUUCAGgc--------GGCG- -5'
22707 5' -58.1 NC_005091.1 + 37319 0.66 0.590685
Target:  5'- cCCGCGcuguCGCGaUCUUgAAGUCCucguacuccguccucGCCGUc -3'
miRNA:   3'- -GGCGCu---GCGC-GGAAgUUCAGG---------------CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 37287 0.67 0.544725
Target:  5'- gCCGcCGGaaCGCCUgaccguaucgCAGG-CCGCCGCc -3'
miRNA:   3'- -GGC-GCUgcGCGGAa---------GUUCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 36883 0.7 0.408765
Target:  5'- gCGCGAgCGCGCCaUCA--UCgCGCCGa -3'
miRNA:   3'- gGCGCU-GCGCGGaAGUucAG-GCGGCg -5'
22707 5' -58.1 NC_005091.1 + 36317 0.76 0.156952
Target:  5'- gUCGCGGCGUGCCgacccgcuugUCA--UCCGCCGUc -3'
miRNA:   3'- -GGCGCUGCGCGGa---------AGUucAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 36100 0.69 0.464623
Target:  5'- uCgGCG-CGCGCCUUCAGcGUCU-CCGg -3'
miRNA:   3'- -GgCGCuGCGCGGAAGUU-CAGGcGGCg -5'
22707 5' -58.1 NC_005091.1 + 35216 0.71 0.341174
Target:  5'- gCCGCGACGCGUaccaCAAGcugcugaCCGgCCGCu -3'
miRNA:   3'- -GGCGCUGCGCGgaa-GUUCa------GGC-GGCG- -5'
22707 5' -58.1 NC_005091.1 + 35152 0.7 0.382453
Target:  5'- gUCGCGGCGcCGCCgcgAGGUaCUGCCGg -3'
miRNA:   3'- -GGCGCUGC-GCGGaagUUCA-GGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.