miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22707 5' -58.1 NC_005091.1 + 34862 1.12 0.000437
Target:  5'- gCCGCGACGCGCCUUCAAGUCCGCCGCc -3'
miRNA:   3'- -GGCGCUGCGCGGAAGUUCAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 34773 0.68 0.503986
Target:  5'- gCCGCG-CGCGUCggCGA-UCCGCUucaGCg -3'
miRNA:   3'- -GGCGCuGCGCGGaaGUUcAGGCGG---CG- -5'
22707 5' -58.1 NC_005091.1 + 34450 0.67 0.534429
Target:  5'- gUCGCGuACG-GCC----GGUUCGCCGCg -3'
miRNA:   3'- -GGCGC-UGCgCGGaaguUCAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 34437 0.69 0.455033
Target:  5'- aCGCGGCGUGCaguacgaCAAGcgcggCCGgCCGCa -3'
miRNA:   3'- gGCGCUGCGCGgaa----GUUCa----GGC-GGCG- -5'
22707 5' -58.1 NC_005091.1 + 34160 0.75 0.178976
Target:  5'- aCGCGGC-CGCUaUCGAGUCCgagcuGCCGCc -3'
miRNA:   3'- gGCGCUGcGCGGaAGUUCAGG-----CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 33716 0.67 0.575963
Target:  5'- uCgGCGcacaucuucuuGCGC-CCUUCGAGgaagCGCCGCg -3'
miRNA:   3'- -GgCGC-----------UGCGcGGAAGUUCag--GCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 33433 0.66 0.586472
Target:  5'- cUCGCGAgCGCGCUgcgcgaagcucuUUCGgaAGucUCCGCCGa -3'
miRNA:   3'- -GGCGCU-GCGCGG------------AAGU--UC--AGGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 32885 0.67 0.544725
Target:  5'- gCCGCcua-CGCCaUCGcuUCCGCCGCa -3'
miRNA:   3'- -GGCGcugcGCGGaAGUucAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 32423 0.66 0.607587
Target:  5'- gCCGcCGAacgcCGUGCUgcuaUCAAGgCCGaCCGCg -3'
miRNA:   3'- -GGC-GCU----GCGCGGa---AGUUCaGGC-GGCG- -5'
22707 5' -58.1 NC_005091.1 + 31707 0.68 0.494004
Target:  5'- gCCGCGcCGgcCGCCUUCGGcUgCGCCGa -3'
miRNA:   3'- -GGCGCuGC--GCGGAAGUUcAgGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 29500 0.67 0.534429
Target:  5'- aCGCuGGCGCGCgccgaucacagCUUCGAGgUCGuuGCg -3'
miRNA:   3'- gGCG-CUGCGCG-----------GAAGUUCaGGCggCG- -5'
22707 5' -58.1 NC_005091.1 + 28807 0.67 0.555083
Target:  5'- gCCGaGGCGCaCCUgCAcGUCCGCCa- -3'
miRNA:   3'- -GGCgCUGCGcGGAaGUuCAGGCGGcg -5'
22707 5' -58.1 NC_005091.1 + 27708 0.66 0.635144
Target:  5'- cCCGC-ACGCGCagggucuCUUCGccgaccgggaucguGGUgCGCCGUg -3'
miRNA:   3'- -GGCGcUGCGCG-------GAAGU--------------UCAgGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 26744 0.68 0.494004
Target:  5'- gCGUGAUGCGCUcaacgcCGGG-CCGCCGa -3'
miRNA:   3'- gGCGCUGCGCGGaa----GUUCaGGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 26568 0.79 0.099301
Target:  5'- uUCGCGACGCGCUgggugagucgUUCgAAGUCCcgGCCGCc -3'
miRNA:   3'- -GGCGCUGCGCGG----------AAG-UUCAGG--CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 26470 0.67 0.565498
Target:  5'- gCCGCagcaGAC-CGCCUgaaugcccgUCAGGaCCGCgCGCg -3'
miRNA:   3'- -GGCG----CUGcGCGGA---------AGUUCaGGCG-GCG- -5'
22707 5' -58.1 NC_005091.1 + 26371 0.7 0.391098
Target:  5'- cCCGCG-CGCGguCCUgacgggcauUCAggcGGUCUGCUGCg -3'
miRNA:   3'- -GGCGCuGCGC--GGA---------AGU---UCAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 26037 0.68 0.474318
Target:  5'- gCCGUGGCgaGCGCgaUC-AGcUCGCCGCg -3'
miRNA:   3'- -GGCGCUG--CGCGgaAGuUCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 25913 0.69 0.44555
Target:  5'- cUCGC--CGCGUCguacggCAAGUUCGCCGUg -3'
miRNA:   3'- -GGCGcuGCGCGGaa----GUUCAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 25469 0.72 0.275251
Target:  5'- uUCGCgGACGCGUggacCAAGUUCGCCGUc -3'
miRNA:   3'- -GGCG-CUGCGCGgaa-GUUCAGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.