miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22707 5' -58.1 NC_005091.1 + 25161 0.67 0.534429
Target:  5'- uCCGUGGC-CGCCgaucGGUUgaaCGCCGCg -3'
miRNA:   3'- -GGCGCUGcGCGGaaguUCAG---GCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 24776 0.67 0.574915
Target:  5'- uCUGCGACGUuaucgagGCCg--AGGaauUCCGCCGUg -3'
miRNA:   3'- -GGCGCUGCG-------CGGaagUUC---AGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 24670 0.7 0.408765
Target:  5'- -gGCG-CGCGCCUUgCAAcgaCGCCGCc -3'
miRNA:   3'- ggCGCuGCGCGGAA-GUUcagGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 24537 0.69 0.436179
Target:  5'- uCCGCGAUGuCGUa--CAAG-CCGCCGg -3'
miRNA:   3'- -GGCGCUGC-GCGgaaGUUCaGGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 24315 0.66 0.62878
Target:  5'- aUCGCGGCGauaggcugGCCgUCGAccGUCgUGCCGCc -3'
miRNA:   3'- -GGCGCUGCg-------CGGaAGUU--CAG-GCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 22840 0.68 0.484113
Target:  5'- -aGCGcACGCGCCUgaa----CGCCGCg -3'
miRNA:   3'- ggCGC-UGCGCGGAaguucagGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 22441 0.68 0.484113
Target:  5'- gCGCGAUcCGCCuUUCGGGUCauCUGCg -3'
miRNA:   3'- gGCGCUGcGCGG-AAGUUCAGgcGGCG- -5'
22707 5' -58.1 NC_005091.1 + 22145 0.69 0.426923
Target:  5'- gCGUGACGCGCCcgCGcAGUgCGUacaGCa -3'
miRNA:   3'- gGCGCUGCGCGGaaGU-UCAgGCGg--CG- -5'
22707 5' -58.1 NC_005091.1 + 21864 0.72 0.303215
Target:  5'- aCGaGACGCG-CUUCAGGUCCGagGCg -3'
miRNA:   3'- gGCgCUGCGCgGAAGUUCAGGCggCG- -5'
22707 5' -58.1 NC_005091.1 + 20492 0.66 0.595959
Target:  5'- gUGCGugGgaacagagaugucCGCgUUaGGGUCUGCCGCg -3'
miRNA:   3'- gGCGCugC-------------GCGgAAgUUCAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 20270 0.73 0.26859
Target:  5'- aCGCGuCGcCGCUUUgCGAGUagCCGCCGUg -3'
miRNA:   3'- gGCGCuGC-GCGGAA-GUUCA--GGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 20024 0.66 0.62878
Target:  5'- aUGCGAgGCGC-----AGaCCGCCGCg -3'
miRNA:   3'- gGCGCUgCGCGgaaguUCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 19527 0.69 0.464623
Target:  5'- uUCGCGGgguccgguugcUGCGCUUUCGGGccgagcgCCGCCGa -3'
miRNA:   3'- -GGCGCU-----------GCGCGGAAGUUCa------GGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 18188 0.67 0.533404
Target:  5'- aCCGCuucaacGGCGUGCCguucgacUUCAGGUCgCGCauCGCc -3'
miRNA:   3'- -GGCG------CUGCGCGG-------AAGUUCAG-GCG--GCG- -5'
22707 5' -58.1 NC_005091.1 + 17904 0.66 0.639385
Target:  5'- gCCGUGGCGCGCaagccgaauauCUUCucG-CUGUCGUa -3'
miRNA:   3'- -GGCGCUGCGCG-----------GAAGuuCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 16264 0.66 0.597015
Target:  5'- cUCGCGAcgaaCGCGCCgagCAcGUUCcacgucgcuugGCCGCg -3'
miRNA:   3'- -GGCGCU----GCGCGGaa-GUuCAGG-----------CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 16213 0.71 0.349167
Target:  5'- cCCGcCGuCGCGCCcggaUCAGGgacgaggCCGCCGg -3'
miRNA:   3'- -GGC-GCuGCGCGGa---AGUUCa------GGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 15656 0.66 0.639385
Target:  5'- aCCaGUGGCcCGCUgcgAAGUCCGuuGCg -3'
miRNA:   3'- -GG-CGCUGcGCGGaagUUCAGGCggCG- -5'
22707 5' -58.1 NC_005091.1 + 14430 0.66 0.62878
Target:  5'- aCGCGACGC-CUaUCGA-UUCGCCGg -3'
miRNA:   3'- gGCGCUGCGcGGaAGUUcAGGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 14226 0.7 0.382453
Target:  5'- aUCGUGACGgGCacggUCGAG-CCGCCuuGCg -3'
miRNA:   3'- -GGCGCUGCgCGga--AGUUCaGGCGG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.