miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22707 5' -58.1 NC_005091.1 + 54938 0.69 0.455033
Target:  5'- gCCGCaACGCGCUcgcCAAG--CGCCGCg -3'
miRNA:   3'- -GGCGcUGCGCGGaa-GUUCagGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 24537 0.69 0.436179
Target:  5'- uCCGCGAUGuCGUa--CAAG-CCGCCGg -3'
miRNA:   3'- -GGCGCUGC-GCGgaaGUUCaGGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 44558 0.71 0.341174
Target:  5'- cCCGCGucuucuucgaGCGCCUUC---UCgGCCGCg -3'
miRNA:   3'- -GGCGCug--------CGCGGAAGuucAGgCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 44774 0.71 0.317997
Target:  5'- gCCGUGGucguugccuuCGUGCCUUCGGccgccuugCCGCCGCc -3'
miRNA:   3'- -GGCGCU----------GCGCGGAAGUUca------GGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 21864 0.72 0.303215
Target:  5'- aCGaGACGCG-CUUCAGGUCCGagGCg -3'
miRNA:   3'- gGCgCUGCGCgGAAGUUCAGGCggCG- -5'
22707 5' -58.1 NC_005091.1 + 52793 0.72 0.288968
Target:  5'- aCGCGGCG-GCgaUCAGG-CCGCaCGCg -3'
miRNA:   3'- gGCGCUGCgCGgaAGUUCaGGCG-GCG- -5'
22707 5' -58.1 NC_005091.1 + 20270 0.73 0.26859
Target:  5'- aCGCGuCGcCGCUUUgCGAGUagCCGCCGUg -3'
miRNA:   3'- gGCGCuGC-GCGGAA-GUUCA--GGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 36317 0.76 0.156952
Target:  5'- gUCGCGGCGUGCCgacccgcuugUCA--UCCGCCGUc -3'
miRNA:   3'- -GGCGCUGCGCGGa---------AGUucAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 26568 0.79 0.099301
Target:  5'- uUCGCGACGCGCUgggugagucgUUCgAAGUCCcgGCCGCc -3'
miRNA:   3'- -GGCGCUGCGCGG----------AAG-UUCAGG--CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 52059 0.86 0.035352
Target:  5'- aCGCGcCGCGCgCUUCGAGauauUCCGCCGCa -3'
miRNA:   3'- gGCGCuGCGCG-GAAGUUC----AGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 16213 0.71 0.349167
Target:  5'- cCCGcCGuCGCGCCcggaUCAGGgacgaggCCGCCGg -3'
miRNA:   3'- -GGC-GCuGCGCGGa---AGUUCa------GGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 45314 0.7 0.373091
Target:  5'- gCCGCGACGCuuGCucaacccgcauauCUUCgAAGUgCCGaCCGCa -3'
miRNA:   3'- -GGCGCUGCG--CG-------------GAAG-UUCA-GGC-GGCG- -5'
22707 5' -58.1 NC_005091.1 + 22145 0.69 0.426923
Target:  5'- gCGUGACGCGCCcgCGcAGUgCGUacaGCa -3'
miRNA:   3'- gGCGCUGCGCGGaaGU-UCAgGCGg--CG- -5'
22707 5' -58.1 NC_005091.1 + 12169 0.69 0.426004
Target:  5'- aCUGCGGCgggaucaGCGCCUUCAugucGUCCGgCa- -3'
miRNA:   3'- -GGCGCUG-------CGCGGAAGUu---CAGGCgGcg -5'
22707 5' -58.1 NC_005091.1 + 36883 0.7 0.408765
Target:  5'- gCGCGAgCGCGCCaUCA--UCgCGCCGa -3'
miRNA:   3'- gGCGCU-GCGCGGaAGUucAG-GCGGCg -5'
22707 5' -58.1 NC_005091.1 + 38072 0.7 0.391098
Target:  5'- gCGCGuuGCGCCUUgCGAGUCaggcucgauaCCGCa -3'
miRNA:   3'- gGCGCugCGCGGAA-GUUCAGgc--------GGCG- -5'
22707 5' -58.1 NC_005091.1 + 26371 0.7 0.391098
Target:  5'- cCCGCG-CGCGguCCUgacgggcauUCAggcGGUCUGCUGCg -3'
miRNA:   3'- -GGCGCuGCGC--GGA---------AGU---UCAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 14226 0.7 0.382453
Target:  5'- aUCGUGACGgGCacggUCGAG-CCGCCuuGCg -3'
miRNA:   3'- -GGCGCUGCgCGga--AGUUCaGGCGG--CG- -5'
22707 5' -58.1 NC_005091.1 + 43561 0.7 0.382453
Target:  5'- aUCGCGAgaaGCGCCggaCAGGUCUuCUGCa -3'
miRNA:   3'- -GGCGCUg--CGCGGaa-GUUCAGGcGGCG- -5'
22707 5' -58.1 NC_005091.1 + 35152 0.7 0.382453
Target:  5'- gUCGCGGCGcCGCCgcgAGGUaCUGCCGg -3'
miRNA:   3'- -GGCGCUGC-GCGGaagUUCA-GGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.