miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22707 5' -58.1 NC_005091.1 + 34862 1.12 0.000437
Target:  5'- gCCGCGACGCGCCUUCAAGUCCGCCGCc -3'
miRNA:   3'- -GGCGCUGCGCGGAAGUUCAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 43561 0.7 0.382453
Target:  5'- aUCGCGAgaaGCGCCggaCAGGUCUuCUGCa -3'
miRNA:   3'- -GGCGCUg--CGCGGaa-GUUCAGGcGGCG- -5'
22707 5' -58.1 NC_005091.1 + 14226 0.7 0.382453
Target:  5'- aUCGUGACGgGCacggUCGAG-CCGCCuuGCg -3'
miRNA:   3'- -GGCGCUGCgCGga--AGUUCaGGCGG--CG- -5'
22707 5' -58.1 NC_005091.1 + 22441 0.68 0.484113
Target:  5'- gCGCGAUcCGCCuUUCGGGUCauCUGCg -3'
miRNA:   3'- gGCGCUGcGCGG-AAGUUCAGgcGGCG- -5'
22707 5' -58.1 NC_005091.1 + 26037 0.68 0.474318
Target:  5'- gCCGUGGCgaGCGCgaUC-AGcUCGCCGCg -3'
miRNA:   3'- -GGCGCUG--CGCGgaAGuUCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 11307 0.68 0.474318
Target:  5'- uUCGCGGCuucaaCGCCUugUUGAGcggCUGCCGCg -3'
miRNA:   3'- -GGCGCUGc----GCGGA--AGUUCa--GGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 19527 0.69 0.464623
Target:  5'- uUCGCGGgguccgguugcUGCGCUUUCGGGccgagcgCCGCCGa -3'
miRNA:   3'- -GGCGCU-----------GCGCGGAAGUUCa------GGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 36100 0.69 0.464623
Target:  5'- uCgGCG-CGCGCCUUCAGcGUCU-CCGg -3'
miRNA:   3'- -GgCGCuGCGCGGAAGUU-CAGGcGGCg -5'
22707 5' -58.1 NC_005091.1 + 54938 0.69 0.455033
Target:  5'- gCCGCaACGCGCUcgcCAAG--CGCCGCg -3'
miRNA:   3'- -GGCGcUGCGCGGaa-GUUCagGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 24537 0.69 0.436179
Target:  5'- uCCGCGAUGuCGUa--CAAG-CCGCCGg -3'
miRNA:   3'- -GGCGCUGC-GCGgaaGUUCaGGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 22145 0.69 0.426923
Target:  5'- gCGUGACGCGCCcgCGcAGUgCGUacaGCa -3'
miRNA:   3'- gGCGCUGCGCGGaaGU-UCAgGCGg--CG- -5'
22707 5' -58.1 NC_005091.1 + 12169 0.69 0.426004
Target:  5'- aCUGCGGCgggaucaGCGCCUUCAugucGUCCGgCa- -3'
miRNA:   3'- -GGCGCUG-------CGCGGAAGUu---CAGGCgGcg -5'
22707 5' -58.1 NC_005091.1 + 36883 0.7 0.408765
Target:  5'- gCGCGAgCGCGCCaUCA--UCgCGCCGa -3'
miRNA:   3'- gGCGCU-GCGCGGaAGUucAG-GCGGCg -5'
22707 5' -58.1 NC_005091.1 + 38072 0.7 0.391098
Target:  5'- gCGCGuuGCGCCUUgCGAGUCaggcucgauaCCGCa -3'
miRNA:   3'- gGCGCugCGCGGAA-GUUCAGgc--------GGCG- -5'
22707 5' -58.1 NC_005091.1 + 26371 0.7 0.391098
Target:  5'- cCCGCG-CGCGguCCUgacgggcauUCAggcGGUCUGCUGCg -3'
miRNA:   3'- -GGCGCuGCGC--GGA---------AGU---UCAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 43178 0.66 0.639385
Target:  5'- gUCGCGAaaGCGCCgggCAAGcgaccuuggcUCCuGUCGCa -3'
miRNA:   3'- -GGCGCUg-CGCGGaa-GUUC----------AGG-CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 57888 0.66 0.639385
Target:  5'- gUCGCGugcgugagaaccGCGCGCUcUCc---CCGCCGCu -3'
miRNA:   3'- -GGCGC------------UGCGCGGaAGuucaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 17904 0.66 0.639385
Target:  5'- gCCGUGGCGCGCaagccgaauauCUUCucG-CUGUCGUa -3'
miRNA:   3'- -GGCGCUGCGCG-----------GAAGuuCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 15656 0.66 0.639385
Target:  5'- aCCaGUGGCcCGCUgcgAAGUCCGuuGCg -3'
miRNA:   3'- -GG-CGCUGcGCGGaagUUCAGGCggCG- -5'
22707 5' -58.1 NC_005091.1 + 34160 0.75 0.178976
Target:  5'- aCGCGGC-CGCUaUCGAGUCCgagcuGCCGCc -3'
miRNA:   3'- gGCGCUGcGCGGaAGUUCAGG-----CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.