miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22707 5' -58.1 NC_005091.1 + 494 0.66 0.639385
Target:  5'- gUCGCGugcgugagaaccGCGCGCUcUCc---CCGCCGCu -3'
miRNA:   3'- -GGCGC------------UGCGCGGaAGuucaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 32885 0.67 0.544725
Target:  5'- gCCGCcua-CGCCaUCGcuUCCGCCGCa -3'
miRNA:   3'- -GGCGcugcGCGGaAGUucAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 25161 0.67 0.534429
Target:  5'- uCCGUGGC-CGCCgaucGGUUgaaCGCCGCg -3'
miRNA:   3'- -GGCGCUGcGCGGaaguUCAG---GCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 34160 0.75 0.178976
Target:  5'- aCGCGGC-CGCUaUCGAGUCCgagcuGCCGCc -3'
miRNA:   3'- gGCGCUGcGCGGaAGUUCAGG-----CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 43178 0.66 0.639385
Target:  5'- gUCGCGAaaGCGCCgggCAAGcgaccuuggcUCCuGUCGCa -3'
miRNA:   3'- -GGCGCUg-CGCGGaa-GUUC----------AGG-CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 10867 0.66 0.62878
Target:  5'- gCCGCGAucguuCGCGCacUCug--CUGCCGCu -3'
miRNA:   3'- -GGCGCU-----GCGCGgaAGuucaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 40508 0.66 0.62878
Target:  5'- aCCGCGAgGCGUacccCGAGgucCCGCaGCu -3'
miRNA:   3'- -GGCGCUgCGCGgaa-GUUCa--GGCGgCG- -5'
22707 5' -58.1 NC_005091.1 + 41025 0.66 0.62878
Target:  5'- gCGgGACGCgGUgUUCAGGUUCacaaccucgGCCGUa -3'
miRNA:   3'- gGCgCUGCG-CGgAAGUUCAGG---------CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 47424 0.66 0.597015
Target:  5'- -aGCGgcaGCGCGUCUUUgAAGUUCGUCaGCa -3'
miRNA:   3'- ggCGC---UGCGCGGAAG-UUCAGGCGG-CG- -5'
22707 5' -58.1 NC_005091.1 + 26470 0.67 0.565498
Target:  5'- gCCGCagcaGAC-CGCCUgaaugcccgUCAGGaCCGCgCGCg -3'
miRNA:   3'- -GGCG----CUGcGCGGA---------AGUUCaGGCG-GCG- -5'
22707 5' -58.1 NC_005091.1 + 13567 0.67 0.575963
Target:  5'- uCgGCGGCGCaccgucGCCaUUCGAGUaUCGCgGCc -3'
miRNA:   3'- -GgCGCUGCG------CGG-AAGUUCA-GGCGgCG- -5'
22707 5' -58.1 NC_005091.1 + 51985 0.66 0.60547
Target:  5'- uUCGUGcCGCGCCUgauggguuacgaCGAG-CCGUCGUu -3'
miRNA:   3'- -GGCGCuGCGCGGAa-----------GUUCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 15656 0.66 0.639385
Target:  5'- aCCaGUGGCcCGCUgcgAAGUCCGuuGCg -3'
miRNA:   3'- -GG-CGCUGcGCGGaagUUCAGGCggCG- -5'
22707 5' -58.1 NC_005091.1 + 52127 0.67 0.575963
Target:  5'- gCGCGGCGCGUaucUCGcgauugaggaAGUCaCGCuCGCc -3'
miRNA:   3'- gGCGCUGCGCGga-AGU----------UCAG-GCG-GCG- -5'
22707 5' -58.1 NC_005091.1 + 17904 0.66 0.639385
Target:  5'- gCCGUGGCGCGCaagccgaauauCUUCucG-CUGUCGUa -3'
miRNA:   3'- -GGCGCUGCGCG-----------GAAGuuCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 32423 0.66 0.607587
Target:  5'- gCCGcCGAacgcCGUGCUgcuaUCAAGgCCGaCCGCg -3'
miRNA:   3'- -GGC-GCU----GCGCGGa---AGUUCaGGC-GGCG- -5'
22707 5' -58.1 NC_005091.1 + 13338 0.67 0.565498
Target:  5'- gCCGUuugucGAUGCgGCCaaCAAGUUCGuuGCg -3'
miRNA:   3'- -GGCG-----CUGCG-CGGaaGUUCAGGCggCG- -5'
22707 5' -58.1 NC_005091.1 + 37287 0.67 0.544725
Target:  5'- gCCGcCGGaaCGCCUgaccguaucgCAGG-CCGCCGCc -3'
miRNA:   3'- -GGC-GCUgcGCGGAa---------GUUCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 57888 0.66 0.639385
Target:  5'- gUCGCGugcgugagaaccGCGCGCUcUCc---CCGCCGCu -3'
miRNA:   3'- -GGCGC------------UGCGCGGaAGuucaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 14430 0.66 0.62878
Target:  5'- aCGCGACGC-CUaUCGA-UUCGCCGg -3'
miRNA:   3'- gGCGCUGCGcGGaAGUUcAGGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.