miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22707 5' -58.1 NC_005091.1 + 51985 0.66 0.60547
Target:  5'- uUCGUGcCGCGCCUgauggguuacgaCGAG-CCGUCGUu -3'
miRNA:   3'- -GGCGCuGCGCGGAa-----------GUUCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 57888 0.66 0.639385
Target:  5'- gUCGCGugcgugagaaccGCGCGCUcUCc---CCGCCGCu -3'
miRNA:   3'- -GGCGC------------UGCGCGGaAGuucaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 35216 0.71 0.341174
Target:  5'- gCCGCGACGCGUaccaCAAGcugcugaCCGgCCGCu -3'
miRNA:   3'- -GGCGCUGCGCGgaa-GUUCa------GGC-GGCG- -5'
22707 5' -58.1 NC_005091.1 + 48715 0.69 0.417784
Target:  5'- aCGCGGCGgGCUgcugCGuguuGGUgUCGCCGCg -3'
miRNA:   3'- gGCGCUGCgCGGaa--GU----UCA-GGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 32885 0.67 0.544725
Target:  5'- gCCGCcua-CGCCaUCGcuUCCGCCGCa -3'
miRNA:   3'- -GGCGcugcGCGGaAGUucAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 17904 0.66 0.639385
Target:  5'- gCCGUGGCGCGCaagccgaauauCUUCucG-CUGUCGUa -3'
miRNA:   3'- -GGCGCUGCGCG-----------GAAGuuCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 11786 0.69 0.426923
Target:  5'- aCC-UGACGUGCCUUCAAcaCCugaaagagaGCCGCg -3'
miRNA:   3'- -GGcGCUGCGCGGAAGUUcaGG---------CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 15656 0.66 0.639385
Target:  5'- aCCaGUGGCcCGCUgcgAAGUCCGuuGCg -3'
miRNA:   3'- -GG-CGCUGcGCGGaagUUCAGGCggCG- -5'
22707 5' -58.1 NC_005091.1 + 494 0.66 0.639385
Target:  5'- gUCGCGugcgugagaaccGCGCGCUcUCc---CCGCCGCu -3'
miRNA:   3'- -GGCGC------------UGCGCGGaAGuucaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 37287 0.67 0.544725
Target:  5'- gCCGcCGGaaCGCCUgaccguaucgCAGG-CCGCCGCc -3'
miRNA:   3'- -GGC-GCUgcGCGGAa---------GUUCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 25469 0.72 0.275251
Target:  5'- uUCGCgGACGCGUggacCAAGUUCGCCGUc -3'
miRNA:   3'- -GGCG-CUGCGCGgaa-GUUCAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 47424 0.66 0.597015
Target:  5'- -aGCGgcaGCGCGUCUUUgAAGUUCGUCaGCa -3'
miRNA:   3'- ggCGC---UGCGCGGAAG-UUCAGGCGG-CG- -5'
22707 5' -58.1 NC_005091.1 + 34437 0.69 0.455033
Target:  5'- aCGCGGCGUGCaguacgaCAAGcgcggCCGgCCGCa -3'
miRNA:   3'- gGCGCUGCGCGgaa----GUUCa----GGC-GGCG- -5'
22707 5' -58.1 NC_005091.1 + 24670 0.7 0.408765
Target:  5'- -gGCG-CGCGCCUUgCAAcgaCGCCGCc -3'
miRNA:   3'- ggCGCuGCGCGGAA-GUUcagGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 47638 0.7 0.391098
Target:  5'- -aGCGGCGUGCCgUgGAaUCCGgCGCa -3'
miRNA:   3'- ggCGCUGCGCGGaAgUUcAGGCgGCG- -5'
22707 5' -58.1 NC_005091.1 + 40508 0.66 0.62878
Target:  5'- aCCGCGAgGCGUacccCGAGgucCCGCaGCu -3'
miRNA:   3'- -GGCGCUgCGCGgaa-GUUCa--GGCGgCG- -5'
22707 5' -58.1 NC_005091.1 + 43178 0.66 0.639385
Target:  5'- gUCGCGAaaGCGCCgggCAAGcgaccuuggcUCCuGUCGCa -3'
miRNA:   3'- -GGCGCUg-CGCGGaa-GUUC----------AGG-CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 26371 0.7 0.391098
Target:  5'- cCCGCG-CGCGguCCUgacgggcauUCAggcGGUCUGCUGCg -3'
miRNA:   3'- -GGCGCuGCGC--GGA---------AGU---UCAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 49553 0.68 0.503986
Target:  5'- gCCGCGucggGgGCGUCUUCGua-CCGCCuGCg -3'
miRNA:   3'- -GGCGC----UgCGCGGAAGUucaGGCGG-CG- -5'
22707 5' -58.1 NC_005091.1 + 4217 0.68 0.494004
Target:  5'- cCCgGCGGCGCGCCcgUCAccg-UGCCGUa -3'
miRNA:   3'- -GG-CGCUGCGCGGa-AGUucagGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.