miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22707 5' -58.1 NC_005091.1 + 24315 0.66 0.62878
Target:  5'- aUCGCGGCGauaggcugGCCgUCGAccGUCgUGCCGCc -3'
miRNA:   3'- -GGCGCUGCg-------CGGaAGUU--CAG-GCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 20024 0.66 0.62878
Target:  5'- aUGCGAgGCGC-----AGaCCGCCGCg -3'
miRNA:   3'- gGCGCUgCGCGgaaguUCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 1294 0.66 0.617118
Target:  5'- uUCGCGACGUGCgg-CAAGcagucgaUCaCGCCGg -3'
miRNA:   3'- -GGCGCUGCGCGgaaGUUC-------AG-GCGGCg -5'
22707 5' -58.1 NC_005091.1 + 54083 0.66 0.607587
Target:  5'- cUCGauuCGCGCCUugUCGcguucGGUCgCGCCGUg -3'
miRNA:   3'- -GGCgcuGCGCGGA--AGU-----UCAG-GCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 16264 0.66 0.597015
Target:  5'- cUCGCGAcgaaCGCGCCgagCAcGUUCcacgucgcuugGCCGCg -3'
miRNA:   3'- -GGCGCU----GCGCGGaa-GUuCAGG-----------CGGCG- -5'
22707 5' -58.1 NC_005091.1 + 53175 0.66 0.639385
Target:  5'- gCGCgGGCGCgaGCCUUCcGGugcaUCCGCC-Ca -3'
miRNA:   3'- gGCG-CUGCG--CGGAAGuUC----AGGCGGcG- -5'
22707 5' -58.1 NC_005091.1 + 11307 0.68 0.474318
Target:  5'- uUCGCGGCuucaaCGCCUugUUGAGcggCUGCCGCg -3'
miRNA:   3'- -GGCGCUGc----GCGGA--AGUUCa--GGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 52793 0.72 0.288968
Target:  5'- aCGCGGCG-GCgaUCAGG-CCGCaCGCg -3'
miRNA:   3'- gGCGCUGCgCGgaAGUUCaGGCG-GCG- -5'
22707 5' -58.1 NC_005091.1 + 21864 0.72 0.303215
Target:  5'- aCGaGACGCG-CUUCAGGUCCGagGCg -3'
miRNA:   3'- gGCgCUGCGCgGAAGUUCAGGCggCG- -5'
22707 5' -58.1 NC_005091.1 + 35152 0.7 0.382453
Target:  5'- gUCGCGGCGcCGCCgcgAGGUaCUGCCGg -3'
miRNA:   3'- -GGCGCUGC-GCGGaagUUCA-GGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 43561 0.7 0.382453
Target:  5'- aUCGCGAgaaGCGCCggaCAGGUCUuCUGCa -3'
miRNA:   3'- -GGCGCUg--CGCGGaa-GUUCAGGcGGCG- -5'
22707 5' -58.1 NC_005091.1 + 14226 0.7 0.382453
Target:  5'- aUCGUGACGgGCacggUCGAG-CCGCCuuGCg -3'
miRNA:   3'- -GGCGCUGCgCGga--AGUUCaGGCGG--CG- -5'
22707 5' -58.1 NC_005091.1 + 26371 0.7 0.391098
Target:  5'- cCCGCG-CGCGguCCUgacgggcauUCAggcGGUCUGCUGCg -3'
miRNA:   3'- -GGCGCuGCGC--GGA---------AGU---UCAGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 26037 0.68 0.474318
Target:  5'- gCCGUGGCgaGCGCgaUC-AGcUCGCCGCg -3'
miRNA:   3'- -GGCGCUG--CGCGgaAGuUCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 22441 0.68 0.484113
Target:  5'- gCGCGAUcCGCCuUUCGGGUCauCUGCg -3'
miRNA:   3'- gGCGCUGcGCGG-AAGUUCAGgcGGCG- -5'
22707 5' -58.1 NC_005091.1 + 31707 0.68 0.494004
Target:  5'- gCCGCGcCGgcCGCCUUCGGcUgCGCCGa -3'
miRNA:   3'- -GGCGCuGC--GCGGAAGUUcAgGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 53549 0.68 0.494004
Target:  5'- aUGC-ACGCGCCUUCuaccUCGUCGCa -3'
miRNA:   3'- gGCGcUGCGCGGAAGuucaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 4217 0.68 0.494004
Target:  5'- cCCgGCGGCGCGCCcgUCAccg-UGCCGUa -3'
miRNA:   3'- -GG-CGCUGCGCGGa-AGUucagGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 49553 0.68 0.503986
Target:  5'- gCCGCGucggGgGCGUCUUCGua-CCGCCuGCg -3'
miRNA:   3'- -GGCGC----UgCGCGGAAGUucaGGCGG-CG- -5'
22707 5' -58.1 NC_005091.1 + 13237 0.68 0.503986
Target:  5'- gCCGCGAucCGCGCaa-CGAacuuGUUgGCCGCa -3'
miRNA:   3'- -GGCGCU--GCGCGgaaGUU----CAGgCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.