miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22707 5' -58.1 NC_005091.1 + 21864 0.72 0.303215
Target:  5'- aCGaGACGCG-CUUCAGGUCCGagGCg -3'
miRNA:   3'- gGCgCUGCGCgGAAGUUCAGGCggCG- -5'
22707 5' -58.1 NC_005091.1 + 52793 0.72 0.288968
Target:  5'- aCGCGGCG-GCgaUCAGG-CCGCaCGCg -3'
miRNA:   3'- gGCGCUGCgCGgaAGUUCaGGCG-GCG- -5'
22707 5' -58.1 NC_005091.1 + 20270 0.73 0.26859
Target:  5'- aCGCGuCGcCGCUUUgCGAGUagCCGCCGUg -3'
miRNA:   3'- gGCGCuGC-GCGGAA-GUUCA--GGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 26037 0.68 0.474318
Target:  5'- gCCGUGGCgaGCGCgaUC-AGcUCGCCGCg -3'
miRNA:   3'- -GGCGCUG--CGCGgaAGuUCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 22441 0.68 0.484113
Target:  5'- gCGCGAUcCGCCuUUCGGGUCauCUGCg -3'
miRNA:   3'- gGCGCUGcGCGG-AAGUUCAGgcGGCG- -5'
22707 5' -58.1 NC_005091.1 + 33433 0.66 0.586472
Target:  5'- cUCGCGAgCGCGCUgcgcgaagcucuUUCGgaAGucUCCGCCGa -3'
miRNA:   3'- -GGCGCU-GCGCGG------------AAGU--UC--AGGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 33716 0.67 0.575963
Target:  5'- uCgGCGcacaucuucuuGCGC-CCUUCGAGgaagCGCCGCg -3'
miRNA:   3'- -GgCGC-----------UGCGcGGAAGUUCag--GCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 41738 0.67 0.574915
Target:  5'- cCCGCuugauGACGUucggGUCUUCGAGcgccucgcgaacuUCCGCCGg -3'
miRNA:   3'- -GGCG-----CUGCG----CGGAAGUUC-------------AGGCGGCg -5'
22707 5' -58.1 NC_005091.1 + 24776 0.67 0.574915
Target:  5'- uCUGCGACGUuaucgagGCCg--AGGaauUCCGCCGUg -3'
miRNA:   3'- -GGCGCUGCG-------CGGaagUUC---AGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 2311 0.67 0.555083
Target:  5'- aUCGCGACGaCGCCga-AGGU-CGCCu- -3'
miRNA:   3'- -GGCGCUGC-GCGGaagUUCAgGCGGcg -5'
22707 5' -58.1 NC_005091.1 + 46677 0.67 0.555083
Target:  5'- aCGCGAaGCGCCUUUAA-UUCGgCGUu -3'
miRNA:   3'- gGCGCUgCGCGGAAGUUcAGGCgGCG- -5'
22707 5' -58.1 NC_005091.1 + 41988 0.67 0.555083
Target:  5'- gCCGUGGCaCG-CUUCAGGUgCGCagaaGCa -3'
miRNA:   3'- -GGCGCUGcGCgGAAGUUCAgGCGg---CG- -5'
22707 5' -58.1 NC_005091.1 + 28807 0.67 0.555083
Target:  5'- gCCGaGGCGCaCCUgCAcGUCCGCCa- -3'
miRNA:   3'- -GGCgCUGCGcGGAaGUuCAGGCGGcg -5'
22707 5' -58.1 NC_005091.1 + 46460 0.67 0.544725
Target:  5'- -gGCGACGC-UCgaCAAG-CCGUCGCg -3'
miRNA:   3'- ggCGCUGCGcGGaaGUUCaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 29500 0.67 0.534429
Target:  5'- aCGCuGGCGCGCgccgaucacagCUUCGAGgUCGuuGCg -3'
miRNA:   3'- gGCG-CUGCGCG-----------GAAGUUCaGGCggCG- -5'
22707 5' -58.1 NC_005091.1 + 13237 0.68 0.503986
Target:  5'- gCCGCGAucCGCGCaa-CGAacuuGUUgGCCGCa -3'
miRNA:   3'- -GGCGCU--GCGCGgaaGUU----CAGgCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 49553 0.68 0.503986
Target:  5'- gCCGCGucggGgGCGUCUUCGua-CCGCCuGCg -3'
miRNA:   3'- -GGCGC----UgCGCGGAAGUucaGGCGG-CG- -5'
22707 5' -58.1 NC_005091.1 + 4217 0.68 0.494004
Target:  5'- cCCgGCGGCGCGCCcgUCAccg-UGCCGUa -3'
miRNA:   3'- -GG-CGCUGCGCGGa-AGUucagGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 53549 0.68 0.494004
Target:  5'- aUGC-ACGCGCCUUCuaccUCGUCGCa -3'
miRNA:   3'- gGCGcUGCGCGGAAGuucaGGCGGCG- -5'
22707 5' -58.1 NC_005091.1 + 31707 0.68 0.494004
Target:  5'- gCCGCGcCGgcCGCCUUCGGcUgCGCCGa -3'
miRNA:   3'- -GGCGCuGC--GCGGAAGUUcAgGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.