miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22708 3' -56.5 NC_005091.1 + 2305 0.66 0.661867
Target:  5'- cGACGCauCGCgACGACGCCGaaggUCG-CCu -3'
miRNA:   3'- -UUGCG--GCGgUGCUGCGGUa---AGUaGGu -5'
22708 3' -56.5 NC_005091.1 + 16507 0.66 0.650901
Target:  5'- cGACGCUGUCG-GACGCCAa-CAUCUc -3'
miRNA:   3'- -UUGCGGCGGUgCUGCGGUaaGUAGGu -5'
22708 3' -56.5 NC_005091.1 + 34855 0.66 0.650901
Target:  5'- cGCGagaGCCGCGACGCgCcUUCAagUCCGc -3'
miRNA:   3'- uUGCgg-CGGUGCUGCG-GuAAGU--AGGU- -5'
22708 3' -56.5 NC_005091.1 + 31706 0.66 0.638818
Target:  5'- gGACGCCGCCGcCGAuacguucgaagaaCGCCAagCAgCCu -3'
miRNA:   3'- -UUGCGGCGGU-GCU-------------GCGGUaaGUaGGu -5'
22708 3' -56.5 NC_005091.1 + 50614 0.66 0.638818
Target:  5'- aGACGUCGCCuguguugacguacGCGGCGgCCgGUUCGUCg- -3'
miRNA:   3'- -UUGCGGCGG-------------UGCUGC-GG-UAAGUAGgu -5'
22708 3' -56.5 NC_005091.1 + 55523 0.66 0.628926
Target:  5'- gGACGCCcggcugacggcgGCCGCGACGCUAUUgCGaagcUUCGu -3'
miRNA:   3'- -UUGCGG------------CGGUGCUGCGGUAA-GU----AGGU- -5'
22708 3' -56.5 NC_005091.1 + 17834 0.66 0.628926
Target:  5'- -uUGCgCGCCACGGCGacaaaCGUUCcgCUAu -3'
miRNA:   3'- uuGCG-GCGGUGCUGCg----GUAAGuaGGU- -5'
22708 3' -56.5 NC_005091.1 + 52097 0.66 0.627827
Target:  5'- cACGCuCGCCccgaaauGCGACGCCGUagCG-CCGa -3'
miRNA:   3'- uUGCG-GCGG-------UGCUGCGGUAa-GUaGGU- -5'
22708 3' -56.5 NC_005091.1 + 29433 0.66 0.617938
Target:  5'- aGACGCCGCCcuuGCG-CGUCGauuuagUCGUCUg -3'
miRNA:   3'- -UUGCGGCGG---UGCuGCGGUa-----AGUAGGu -5'
22708 3' -56.5 NC_005091.1 + 7128 0.66 0.617938
Target:  5'- cGCGCCGCCAUcugccggccgagGACGCCc--CggCCAa -3'
miRNA:   3'- uUGCGGCGGUG------------CUGCGGuaaGuaGGU- -5'
22708 3' -56.5 NC_005091.1 + 13518 0.66 0.617938
Target:  5'- cACGUCGCUgcuCGACGCCGggUCGcuuUCCu -3'
miRNA:   3'- uUGCGGCGGu--GCUGCGGUa-AGU---AGGu -5'
22708 3' -56.5 NC_005091.1 + 34156 0.66 0.617938
Target:  5'- --gGCCGCUAuCGAguccgagcugcCGCCcgaGUUCAUCCAu -3'
miRNA:   3'- uugCGGCGGU-GCU-----------GCGG---UAAGUAGGU- -5'
22708 3' -56.5 NC_005091.1 + 36313 0.66 0.606962
Target:  5'- gAGCGUCGCgGCG-UGCCGacccgcuugUCAUCCGc -3'
miRNA:   3'- -UUGCGGCGgUGCuGCGGUa--------AGUAGGU- -5'
22708 3' -56.5 NC_005091.1 + 9438 0.66 0.606962
Target:  5'- cGCGaugUGCCACGAC-CCGUguuacgUCGUCCAg -3'
miRNA:   3'- uUGCg--GCGGUGCUGcGGUA------AGUAGGU- -5'
22708 3' -56.5 NC_005091.1 + 33879 0.67 0.585084
Target:  5'- cGACGCCGCC-CGGCGUacc-CAUCg- -3'
miRNA:   3'- -UUGCGGCGGuGCUGCGguaaGUAGgu -5'
22708 3' -56.5 NC_005091.1 + 18268 0.67 0.585084
Target:  5'- uACGCCGUUGUGACGCUAUaCAUCgCAc -3'
miRNA:   3'- uUGCGGCGGUGCUGCGGUAaGUAG-GU- -5'
22708 3' -56.5 NC_005091.1 + 54893 0.67 0.5742
Target:  5'- --gGCC-CCGCGcCGCCggUCGUCUAg -3'
miRNA:   3'- uugCGGcGGUGCuGCGGuaAGUAGGU- -5'
22708 3' -56.5 NC_005091.1 + 16713 0.67 0.5742
Target:  5'- cGCGCCGCCuaggaaGGcCGCUAcgUCGUCCc -3'
miRNA:   3'- uUGCGGCGGug----CU-GCGGUa-AGUAGGu -5'
22708 3' -56.5 NC_005091.1 + 39607 0.67 0.5742
Target:  5'- cGCGCCGUguCGACGCaucUCGUCg- -3'
miRNA:   3'- uUGCGGCGguGCUGCGguaAGUAGgu -5'
22708 3' -56.5 NC_005091.1 + 46166 0.67 0.563363
Target:  5'- cAACGUCGgCAUGGCGCUGUUUcaCCAg -3'
miRNA:   3'- -UUGCGGCgGUGCUGCGGUAAGuaGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.