miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22708 5' -60.8 NC_005091.1 + 26682 0.66 0.444305
Target:  5'- -cUGCuGCG-GCGgccgGCGGCG-GCCGGg -3'
miRNA:   3'- uuACG-CGCuCGCag--CGCCGCaCGGCU- -5'
22708 5' -60.8 NC_005091.1 + 55024 0.66 0.444305
Target:  5'- --cGCGCGGcgcuuggcgagcGCGUUGCGGCG-GCg-- -3'
miRNA:   3'- uuaCGCGCU------------CGCAGCGCCGCaCGgcu -5'
22708 5' -60.8 NC_005091.1 + 5836 0.66 0.444305
Target:  5'- --gGCuCGaAGCGgugCGCGGCGUGCg-- -3'
miRNA:   3'- uuaCGcGC-UCGCa--GCGCCGCACGgcu -5'
22708 5' -60.8 NC_005091.1 + 10225 0.66 0.434911
Target:  5'- --aGUGCG-GCGcUCG-GcGCGUGCCGGc -3'
miRNA:   3'- uuaCGCGCuCGC-AGCgC-CGCACGGCU- -5'
22708 5' -60.8 NC_005091.1 + 22220 0.66 0.434911
Target:  5'- -cUGCGCGGGCG-CGUcacgccuuuuGGC-UGCCGu -3'
miRNA:   3'- uuACGCGCUCGCaGCG----------CCGcACGGCu -5'
22708 5' -60.8 NC_005091.1 + 35138 0.66 0.432115
Target:  5'- --aGCuuGUGGuacGCGUCGCGGCGccgccgcgagguacUGCCGGc -3'
miRNA:   3'- uuaCG--CGCU---CGCAGCGCCGC--------------ACGGCU- -5'
22708 5' -60.8 NC_005091.1 + 17302 0.66 0.425632
Target:  5'- --aGaCGUGAGCGUCGggccggaaacCGGCGUGaCCu- -3'
miRNA:   3'- uuaC-GCGCUCGCAGC----------GCCGCAC-GGcu -5'
22708 5' -60.8 NC_005091.1 + 14286 0.66 0.416473
Target:  5'- cGAUGCGUaucGGCuUCGCGGUGUcGUCGGc -3'
miRNA:   3'- -UUACGCGc--UCGcAGCGCCGCA-CGGCU- -5'
22708 5' -60.8 NC_005091.1 + 33313 0.66 0.416473
Target:  5'- -cUGCGCGGGCagaugGUCGCcGCGcauuacGCCGGc -3'
miRNA:   3'- uuACGCGCUCG-----CAGCGcCGCa-----CGGCU- -5'
22708 5' -60.8 NC_005091.1 + 51147 0.66 0.406537
Target:  5'- ---cCGCGGGCGUUgaucgaaGCGGCGcGCUGGc -3'
miRNA:   3'- uuacGCGCUCGCAG-------CGCCGCaCGGCU- -5'
22708 5' -60.8 NC_005091.1 + 6186 0.67 0.37254
Target:  5'- --aGCGCGGGgGcUUGCGGgCGacgaGCCGAa -3'
miRNA:   3'- uuaCGCGCUCgC-AGCGCC-GCa---CGGCU- -5'
22708 5' -60.8 NC_005091.1 + 2376 0.67 0.347736
Target:  5'- --cGuCGCGAuGCGUCGUGGCuucuUGCCa- -3'
miRNA:   3'- uuaC-GCGCU-CGCAGCGCCGc---ACGGcu -5'
22708 5' -60.8 NC_005091.1 + 33274 0.68 0.301748
Target:  5'- cGAUGUGU--GCGUCGCGuCGUGCCa- -3'
miRNA:   3'- -UUACGCGcuCGCAGCGCcGCACGGcu -5'
22708 5' -60.8 NC_005091.1 + 16337 0.69 0.294555
Target:  5'- --gGCGCGuuCGUCGCGaGCGgcgcaucgcaUGCCGGc -3'
miRNA:   3'- uuaCGCGCucGCAGCGC-CGC----------ACGGCU- -5'
22708 5' -60.8 NC_005091.1 + 45396 0.69 0.293843
Target:  5'- uAUGCGgGuugagcaAGCGUCGCGGCaaauacucGUGcCCGAc -3'
miRNA:   3'- uUACGCgC-------UCGCAGCGCCG--------CAC-GGCU- -5'
22708 5' -60.8 NC_005091.1 + 51838 0.71 0.21849
Target:  5'- -cUGCGCGAGuCG-CGCGaaGUGCUGAa -3'
miRNA:   3'- uuACGCGCUC-GCaGCGCcgCACGGCU- -5'
22708 5' -60.8 NC_005091.1 + 18148 0.71 0.202299
Target:  5'- --gGCGCGAGCuUCGCGGCccGgCGAu -3'
miRNA:   3'- uuaCGCGCUCGcAGCGCCGcaCgGCU- -5'
22708 5' -60.8 NC_005091.1 + 18175 0.74 0.132578
Target:  5'- --aGCGUGAGCGUgaacCGCuucaacGGCGUGCCGu -3'
miRNA:   3'- uuaCGCGCUCGCA----GCG------CCGCACGGCu -5'
22708 5' -60.8 NC_005091.1 + 36305 1.06 0.000517
Target:  5'- cAAUGCGCGAGCGUCGCGGCGUGCCGAc -3'
miRNA:   3'- -UUACGCGCUCGCAGCGCCGCACGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.