miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22709 3' -56.4 NC_005091.1 + 10305 0.66 0.648981
Target:  5'- cGCuCGGCGCUUgucgUCGUcCGUAUGGUAg -3'
miRNA:   3'- -CGuGCCGCGAA----GGUAcGCGUGCCAUa -5'
22709 3' -56.4 NC_005091.1 + 10207 0.66 0.648981
Target:  5'- uGC-CGGCGUaacgUCCGUcucGCGCGCgaGGUAg -3'
miRNA:   3'- -CGuGCCGCGa---AGGUA---CGCGUG--CCAUa -5'
22709 3' -56.4 NC_005091.1 + 53557 0.67 0.605013
Target:  5'- aCGCGGUGUcgucUUCCGcuUGcCGCACGGg-- -3'
miRNA:   3'- cGUGCCGCG----AAGGU--AC-GCGUGCCaua -5'
22709 3' -56.4 NC_005091.1 + 1063 0.67 0.605013
Target:  5'- -gACGGaguuGCcgUCUAUGCGCGCGGc-- -3'
miRNA:   3'- cgUGCCg---CGa-AGGUACGCGUGCCaua -5'
22709 3' -56.4 NC_005091.1 + 55024 0.67 0.594056
Target:  5'- cGCGCGGCGCUUggCGaGCGCguuGCGGc-- -3'
miRNA:   3'- -CGUGCCGCGAAg-GUaCGCG---UGCCaua -5'
22709 3' -56.4 NC_005091.1 + 31254 0.67 0.594056
Target:  5'- uGCAgGaGCGCUUCCAaGCGgucguCGCGGa-- -3'
miRNA:   3'- -CGUgC-CGCGAAGGUaCGC-----GUGCCaua -5'
22709 3' -56.4 NC_005091.1 + 50815 0.67 0.583131
Target:  5'- cGUGCGGCcg--UCGUGCGCGCGGcUAUc -3'
miRNA:   3'- -CGUGCCGcgaaGGUACGCGUGCC-AUA- -5'
22709 3' -56.4 NC_005091.1 + 54666 0.67 0.548485
Target:  5'- cGCGCGGCGaaagcaaauggUCCGUGuCGguCGGUc- -3'
miRNA:   3'- -CGUGCCGCga---------AGGUAC-GCguGCCAua -5'
22709 3' -56.4 NC_005091.1 + 45784 0.68 0.518712
Target:  5'- gGCGCGGCGCgcggCCGacGCGUACaGGa-- -3'
miRNA:   3'- -CGUGCCGCGaa--GGUa-CGCGUG-CCaua -5'
22709 3' -56.4 NC_005091.1 + 33813 0.68 0.518712
Target:  5'- aCGCGGCGCUUCCucgaaggGCGCAa----- -3'
miRNA:   3'- cGUGCCGCGAAGGua-----CGCGUgccaua -5'
22709 3' -56.4 NC_005091.1 + 18296 0.68 0.487549
Target:  5'- cCACGGCucgcauGUUUCCGacguucUGCGCGCGGa-- -3'
miRNA:   3'- cGUGCCG------CGAAGGU------ACGCGUGCCaua -5'
22709 3' -56.4 NC_005091.1 + 47638 0.69 0.437698
Target:  5'- -aGCGGCGUgccguggaaUCCG-GCGCACGGUu- -3'
miRNA:   3'- cgUGCCGCGa--------AGGUaCGCGUGCCAua -5'
22709 3' -56.4 NC_005091.1 + 22759 0.7 0.418589
Target:  5'- aGCGCGGCGUUcaggCgCGUGCGCuCGGc-- -3'
miRNA:   3'- -CGUGCCGCGAa---G-GUACGCGuGCCaua -5'
22709 3' -56.4 NC_005091.1 + 23409 0.7 0.417647
Target:  5'- gGCcuUGGCGCUUCCGugccugcugccauUGCGCAcucCGGUGc -3'
miRNA:   3'- -CGu-GCCGCGAAGGU-------------ACGCGU---GCCAUa -5'
22709 3' -56.4 NC_005091.1 + 23308 0.7 0.409227
Target:  5'- cGCGCcGCGCUaCCAcaGCgGCACGGUAg -3'
miRNA:   3'- -CGUGcCGCGAaGGUa-CG-CGUGCCAUa -5'
22709 3' -56.4 NC_005091.1 + 9223 0.7 0.3909
Target:  5'- cGCGCGGUGUUUCCG-GCgGUGCGGc-- -3'
miRNA:   3'- -CGUGCCGCGAAGGUaCG-CGUGCCaua -5'
22709 3' -56.4 NC_005091.1 + 40913 0.7 0.3909
Target:  5'- gGUuCGGCGCUUUCG-GCGUACGGc-- -3'
miRNA:   3'- -CGuGCCGCGAAGGUaCGCGUGCCaua -5'
22709 3' -56.4 NC_005091.1 + 19390 0.72 0.323148
Target:  5'- aGCGCGGCGCUcgggaguggUUCAaGuCGCACGGg-- -3'
miRNA:   3'- -CGUGCCGCGA---------AGGUaC-GCGUGCCaua -5'
22709 3' -56.4 NC_005091.1 + 36428 1.07 0.000987
Target:  5'- aGCACGGCGCUUCCAUGCGCACGGUAUc -3'
miRNA:   3'- -CGUGCCGCGAAGGUACGCGUGCCAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.