miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22709 5' -56.6 NC_005091.1 + 49284 0.66 0.630238
Target:  5'- -gACGGgGgagaaGCCGCAcGUCAUCCgCAUc -3'
miRNA:   3'- uaUGUCgCag---CGGCGU-CAGUAGG-GUG- -5'
22709 5' -56.6 NC_005091.1 + 44524 0.66 0.605992
Target:  5'- uUACAGgcCGUCGCUGCcGUCGccuucgucgccgCCCGCg -3'
miRNA:   3'- uAUGUC--GCAGCGGCGuCAGUa-----------GGGUG- -5'
22709 5' -56.6 NC_005091.1 + 36347 0.67 0.575303
Target:  5'- -aAUGGCGUCGUgGCGGcguUCAUCUCGu -3'
miRNA:   3'- uaUGUCGCAGCGgCGUC---AGUAGGGUg -5'
22709 5' -56.6 NC_005091.1 + 35225 0.67 0.575303
Target:  5'- -cGCGGCGgCGCCGCGacgCGUaCCACa -3'
miRNA:   3'- uaUGUCGCaGCGGCGUca-GUAgGGUG- -5'
22709 5' -56.6 NC_005091.1 + 57251 0.67 0.564422
Target:  5'- -aACAGCGucuUCGCCGCcc-CAUUCCAUc -3'
miRNA:   3'- uaUGUCGC---AGCGGCGucaGUAGGGUG- -5'
22709 5' -56.6 NC_005091.1 + 52873 0.67 0.564422
Target:  5'- cGUGCGGCcugaUCGCCGCcG-CGUCCCu- -3'
miRNA:   3'- -UAUGUCGc---AGCGGCGuCaGUAGGGug -5'
22709 5' -56.6 NC_005091.1 + 27250 0.67 0.53214
Target:  5'- -gGCuGGCGUcgCGCCGCAGUCcgagauaCCACu -3'
miRNA:   3'- uaUG-UCGCA--GCGGCGUCAGuag----GGUG- -5'
22709 5' -56.6 NC_005091.1 + 43023 0.68 0.51099
Target:  5'- -cGCAGUgagGUCGUCaaaGCAGUCAUCggCCACu -3'
miRNA:   3'- uaUGUCG---CAGCGG---CGUCAGUAG--GGUG- -5'
22709 5' -56.6 NC_005091.1 + 29499 0.68 0.47995
Target:  5'- -gGCGGCGUCucgGUCGUGGUCAagCCCGg -3'
miRNA:   3'- uaUGUCGCAG---CGGCGUCAGUa-GGGUg -5'
22709 5' -56.6 NC_005091.1 + 26839 0.68 0.469808
Target:  5'- gGUGCGGCGUCGCagGCGuUCAauaCCGCa -3'
miRNA:   3'- -UAUGUCGCAGCGg-CGUcAGUag-GGUG- -5'
22709 5' -56.6 NC_005091.1 + 40539 0.68 0.469808
Target:  5'- -cAUGGCuuagGUCGCCGCcgccgAGUCGguaUCCCGCg -3'
miRNA:   3'- uaUGUCG----CAGCGGCG-----UCAGU---AGGGUG- -5'
22709 5' -56.6 NC_005091.1 + 51440 0.69 0.459777
Target:  5'- -cGCAGCGUCgacaGCCcCGGUCGUcgcuuccgCCCACu -3'
miRNA:   3'- uaUGUCGCAG----CGGcGUCAGUA--------GGGUG- -5'
22709 5' -56.6 NC_005091.1 + 23417 0.69 0.449861
Target:  5'- -aGCAGCGccaUCGCCGCGcgCGUCgCCAUg -3'
miRNA:   3'- uaUGUCGC---AGCGGCGUcaGUAG-GGUG- -5'
22709 5' -56.6 NC_005091.1 + 34454 0.7 0.392977
Target:  5'- cGUACGGCcgguUCGCCGCGcg-GUCCCACu -3'
miRNA:   3'- -UAUGUCGc---AGCGGCGUcagUAGGGUG- -5'
22709 5' -56.6 NC_005091.1 + 16875 0.71 0.340976
Target:  5'- cUGCAGCGa-GCCGUucguGGUCGUCCCcCa -3'
miRNA:   3'- uAUGUCGCagCGGCG----UCAGUAGGGuG- -5'
22709 5' -56.6 NC_005091.1 + 36463 1.07 0.000866
Target:  5'- gAUACAGCGUCGCCGCAGUCAUCCCACu -3'
miRNA:   3'- -UAUGUCGCAGCGGCGUCAGUAGGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.