Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22709 | 5' | -56.6 | NC_005091.1 | + | 44524 | 0.66 | 0.605992 |
Target: 5'- uUACAGgcCGUCGCUGCcGUCGccuucgucgccgCCCGCg -3' miRNA: 3'- uAUGUC--GCAGCGGCGuCAGUa-----------GGGUG- -5' |
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22709 | 5' | -56.6 | NC_005091.1 | + | 49284 | 0.66 | 0.630238 |
Target: 5'- -gACGGgGgagaaGCCGCAcGUCAUCCgCAUc -3' miRNA: 3'- uaUGUCgCag---CGGCGU-CAGUAGG-GUG- -5' |
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22709 | 5' | -56.6 | NC_005091.1 | + | 57251 | 0.67 | 0.564422 |
Target: 5'- -aACAGCGucuUCGCCGCcc-CAUUCCAUc -3' miRNA: 3'- uaUGUCGC---AGCGGCGucaGUAGGGUG- -5' |
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22709 | 5' | -56.6 | NC_005091.1 | + | 52873 | 0.67 | 0.564422 |
Target: 5'- cGUGCGGCcugaUCGCCGCcG-CGUCCCu- -3' miRNA: 3'- -UAUGUCGc---AGCGGCGuCaGUAGGGug -5' |
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22709 | 5' | -56.6 | NC_005091.1 | + | 36347 | 0.67 | 0.575303 |
Target: 5'- -aAUGGCGUCGUgGCGGcguUCAUCUCGu -3' miRNA: 3'- uaUGUCGCAGCGgCGUC---AGUAGGGUg -5' |
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22709 | 5' | -56.6 | NC_005091.1 | + | 35225 | 0.67 | 0.575303 |
Target: 5'- -cGCGGCGgCGCCGCGacgCGUaCCACa -3' miRNA: 3'- uaUGUCGCaGCGGCGUca-GUAgGGUG- -5' |
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22709 | 5' | -56.6 | NC_005091.1 | + | 27250 | 0.67 | 0.53214 |
Target: 5'- -gGCuGGCGUcgCGCCGCAGUCcgagauaCCACu -3' miRNA: 3'- uaUG-UCGCA--GCGGCGUCAGuag----GGUG- -5' |
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22709 | 5' | -56.6 | NC_005091.1 | + | 29499 | 0.68 | 0.47995 |
Target: 5'- -gGCGGCGUCucgGUCGUGGUCAagCCCGg -3' miRNA: 3'- uaUGUCGCAG---CGGCGUCAGUa-GGGUg -5' |
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22709 | 5' | -56.6 | NC_005091.1 | + | 26839 | 0.68 | 0.469808 |
Target: 5'- gGUGCGGCGUCGCagGCGuUCAauaCCGCa -3' miRNA: 3'- -UAUGUCGCAGCGg-CGUcAGUag-GGUG- -5' |
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22709 | 5' | -56.6 | NC_005091.1 | + | 43023 | 0.68 | 0.51099 |
Target: 5'- -cGCAGUgagGUCGUCaaaGCAGUCAUCggCCACu -3' miRNA: 3'- uaUGUCG---CAGCGG---CGUCAGUAG--GGUG- -5' |
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22709 | 5' | -56.6 | NC_005091.1 | + | 40539 | 0.68 | 0.469808 |
Target: 5'- -cAUGGCuuagGUCGCCGCcgccgAGUCGguaUCCCGCg -3' miRNA: 3'- uaUGUCG----CAGCGGCG-----UCAGU---AGGGUG- -5' |
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22709 | 5' | -56.6 | NC_005091.1 | + | 51440 | 0.69 | 0.459777 |
Target: 5'- -cGCAGCGUCgacaGCCcCGGUCGUcgcuuccgCCCACu -3' miRNA: 3'- uaUGUCGCAG----CGGcGUCAGUA--------GGGUG- -5' |
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22709 | 5' | -56.6 | NC_005091.1 | + | 23417 | 0.69 | 0.449861 |
Target: 5'- -aGCAGCGccaUCGCCGCGcgCGUCgCCAUg -3' miRNA: 3'- uaUGUCGC---AGCGGCGUcaGUAG-GGUG- -5' |
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22709 | 5' | -56.6 | NC_005091.1 | + | 34454 | 0.7 | 0.392977 |
Target: 5'- cGUACGGCcgguUCGCCGCGcg-GUCCCACu -3' miRNA: 3'- -UAUGUCGc---AGCGGCGUcagUAGGGUG- -5' |
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22709 | 5' | -56.6 | NC_005091.1 | + | 16875 | 0.71 | 0.340976 |
Target: 5'- cUGCAGCGa-GCCGUucguGGUCGUCCCcCa -3' miRNA: 3'- uAUGUCGCagCGGCG----UCAGUAGGGuG- -5' |
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22709 | 5' | -56.6 | NC_005091.1 | + | 36463 | 1.07 | 0.000866 |
Target: 5'- gAUACAGCGUCGCCGCAGUCAUCCCACu -3' miRNA: 3'- -UAUGUCGCAGCGGCGUCAGUAGGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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