miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22710 3' -54.6 NC_005091.1 + 14409 0.66 0.750807
Target:  5'- --cGggGUCuGgCACg--UGGCCGUCg -3'
miRNA:   3'- cuaCuuCGGuCgGUGaaaGCCGGCAG- -5'
22710 3' -54.6 NC_005091.1 + 33266 0.66 0.750807
Target:  5'- cAUGAAG-CAGCuCGCgg-CGGCCGa- -3'
miRNA:   3'- cUACUUCgGUCG-GUGaaaGCCGGCag -5'
22710 3' -54.6 NC_005091.1 + 57202 0.66 0.737043
Target:  5'- cGcgGAAGCuggcguucgauauaCAGCCGC--UCGGCCG-Ca -3'
miRNA:   3'- -CuaCUUCG--------------GUCGGUGaaAGCCGGCaG- -5'
22710 3' -54.6 NC_005091.1 + 2125 0.66 0.729553
Target:  5'- uGAUGguGCCGGUaaGCgcgUCGGCCGa- -3'
miRNA:   3'- -CUACuuCGGUCGg-UGaa-AGCCGGCag -5'
22710 3' -54.6 NC_005091.1 + 45579 0.66 0.729553
Target:  5'- uGUGAAGCUGGCCGgcgUCGGCUu-- -3'
miRNA:   3'- cUACUUCGGUCGGUgaaAGCCGGcag -5'
22710 3' -54.6 NC_005091.1 + 2232 0.66 0.71877
Target:  5'- aGUGAuccucGCCAGuuCCGC-UUCGGCCGa- -3'
miRNA:   3'- cUACUu----CGGUC--GGUGaAAGCCGGCag -5'
22710 3' -54.6 NC_005091.1 + 10967 0.66 0.707899
Target:  5'- ---cAGGCCGGCCGCcgggUCGaGCUGUUu -3'
miRNA:   3'- cuacUUCGGUCGGUGaa--AGC-CGGCAG- -5'
22710 3' -54.6 NC_005091.1 + 28062 0.66 0.707899
Target:  5'- cGGUGAuGUCGGCUgcauccggcuugACUUggaagCGGCCGUUc -3'
miRNA:   3'- -CUACUuCGGUCGG------------UGAAa----GCCGGCAG- -5'
22710 3' -54.6 NC_005091.1 + 19553 0.67 0.696951
Target:  5'- --gGAGGgCAcGCCGCa---GGCCGUCg -3'
miRNA:   3'- cuaCUUCgGU-CGGUGaaagCCGGCAG- -5'
22710 3' -54.6 NC_005091.1 + 11775 0.67 0.69035
Target:  5'- aGUGcGGCCAGUC-CUUcagcaucuguugguaUCGGCCGcUCg -3'
miRNA:   3'- cUACuUCGGUCGGuGAA---------------AGCCGGC-AG- -5'
22710 3' -54.6 NC_005091.1 + 46840 0.67 0.674873
Target:  5'- -uUGAGcGCCAGCUuc--UCGGCgGUCg -3'
miRNA:   3'- cuACUU-CGGUCGGugaaAGCCGgCAG- -5'
22710 3' -54.6 NC_005091.1 + 7173 0.67 0.663766
Target:  5'- -----uGCCGGCaGCgg-CGGCCGUCu -3'
miRNA:   3'- cuacuuCGGUCGgUGaaaGCCGGCAG- -5'
22710 3' -54.6 NC_005091.1 + 42412 0.67 0.663766
Target:  5'- uGAUGcGGCCuucGCCGa--UCGGCuCGUCg -3'
miRNA:   3'- -CUACuUCGGu--CGGUgaaAGCCG-GCAG- -5'
22710 3' -54.6 NC_005091.1 + 26593 0.67 0.663766
Target:  5'- --cGAAGucCCGGCCGCcgcCGGCCGcCg -3'
miRNA:   3'- cuaCUUC--GGUCGGUGaaaGCCGGCaG- -5'
22710 3' -54.6 NC_005091.1 + 46275 0.68 0.630305
Target:  5'- --cGAGGCCG--CGCUcgUGGCCGUCg -3'
miRNA:   3'- cuaCUUCGGUcgGUGAaaGCCGGCAG- -5'
22710 3' -54.6 NC_005091.1 + 22834 0.68 0.607989
Target:  5'- --cGGAGCgAacGCCGCUgcUCGGCCGcCa -3'
miRNA:   3'- cuaCUUCGgU--CGGUGAa-AGCCGGCaG- -5'
22710 3' -54.6 NC_005091.1 + 34743 0.68 0.596858
Target:  5'- cGUGAAGCCgucguugucGGCCAUguccCGGCCG-Cg -3'
miRNA:   3'- cUACUUCGG---------UCGGUGaaa-GCCGGCaG- -5'
22710 3' -54.6 NC_005091.1 + 13049 0.68 0.585758
Target:  5'- -uUGggGaCCAGCCAUa--CGGCCccGUCa -3'
miRNA:   3'- cuACuuC-GGUCGGUGaaaGCCGG--CAG- -5'
22710 3' -54.6 NC_005091.1 + 1546 0.7 0.509633
Target:  5'- --aGAGGCCGGCCGC---CGGaUCGUCc -3'
miRNA:   3'- cuaCUUCGGUCGGUGaaaGCC-GGCAG- -5'
22710 3' -54.6 NC_005091.1 + 31711 0.7 0.499074
Target:  5'- -----cGCCGGCCGCcUUCGGCUG-Cg -3'
miRNA:   3'- cuacuuCGGUCGGUGaAAGCCGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.